Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2877640	2877695	56	3 [1]	[0] 3	casA/cas3	type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3

TGCATTTCAAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCA  >  NZ_CP009273/2877696‑2877785 |                                                                                          tgcatTTCAAATCTGCAAGTTATTCGTTTTATTATTAAAGaa                                                  >  1:15674/1‑42 (MQ=255) tgcatTTCAAATCTGCAAGTTATTCGTTTTATTATTAAAGaa                                                  <  2:15674/42‑1 (MQ=255) tgcatTTCAAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCa  >  2:173215/1‑90 (MQ=255) |                                                                                          TGCATTTCAAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCA  >  NZ_CP009273/2877696‑2877785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑