Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3127428	3127475	48	3 [0]	[0] 2	yghS/yghT	dTMP kinase/dTMP kinase

TAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCG  >  NZ_CP009273/3127476‑3127520 |                                             taaaGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCg  <  1:301709/45‑1 (MQ=255) taaaGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCg  >  2:301709/1‑45 (MQ=255) |                                             TAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCG  >  NZ_CP009273/3127476‑3127520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑