Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3575106	3575136	31	2 [0]	[0] 3	yhhY/hcp	N‑acetyltransferase/Hcp1 family type VI secretion system effector

ACAATTTCCTGGAGTAAATAAATAACAATTAACAAGCATAATATTGCCATTGATAAAATAGCATGCCATAAAAGGACTTTTCAGGGATGA  >  NZ_CP009273/3575137‑3575226 |                                                                                          aCAATTTCCTGGAGTAAATAAATAACAATTAACAAGCATAATATTGCCAtt                                         <  1:469533/51‑1 (MQ=255) aCAATTTCCTGGAGTAAATAAATAACAATTAACAAGCATAATATTGCCAtt                                         >  2:469533/1‑51 (MQ=255) aCAATTTCCTGGAGTAAATAAATAACAATTAACAAGCATAATATTGCCATTGATAAAATAGCATGCCATAAAAGGACTTTTCAGGGATGa  >  2:242454/1‑90 (MQ=255) |                                                                                          ACAATTTCCTGGAGTAAATAAATAACAATTAACAAGCATAATATTGCCATTGATAAAATAGCATGCCATAAAAGGACTTTTCAGGGATGA  >  NZ_CP009273/3575137‑3575226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑