Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3576022	3576022	1	2 [0]	[0] 3	hcp	Hcp1 family type VI secretion system effector

CATTAAGAGACCTTCAAAAGACTTAGCTAACTTACGAAAGGAGTTTAATAAAACTGTAAGAAAAAATTTTCTTATCAAACTTGCAAAAAC  >  NZ_CP009273/3576023‑3576112 |                                                                                          cATTAAGAGACCTTCAAAAGACTTAGCTAACTTACGAAAGGAGt                                                <  1:493011/44‑1 (MQ=255) cATTAAGAGACCTTCAAAAGACTTAGCTAACTTACGAAAGGAGt                                                >  2:493011/1‑44 (MQ=255) cATTAAGAGACCTTCAAAAGACTTAGCTAACTTACGAAAGGAGTTTAATAAAACTGTAAGAAAAAATTTTCTTATCAAACTTGCAAAAAc  >  2:437940/1‑90 (MQ=255) |                                                                                          CATTAAGAGACCTTCAAAAGACTTAGCTAACTTACGAAAGGAGTTTAATAAAACTGTAAGAAAAAATTTTCTTATCAAACTTGCAAAAAC  >  NZ_CP009273/3576023‑3576112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑