| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 58.3% | 2.7 / 11.1 | 12 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| Reads supporting (aligned to +/- strand): ref base T (5/0); new base C (0/7); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.26e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TAACGAAATCGGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATG > NZ_CP009273/3214043‑3214208 | tAACGAAATCGGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCAt > 1:423783/1‑90 (MQ=255)aaaggAAATGGGTTATAACTTTGCCAGGGAGTTGTCCCGCCAGCGCTTCCTGGTGGCCGGAACGCTAAATAACGCAAAAACGACCCGCAt < 2:48655/86‑1 (MQ=255) aTCGGCTATATCTTTGCCGGGGAGTTTTCCCCCCAGCGCGTACTGGGGGCCGGAACGCTAAATAACCCAAAAACGCCCCGCATTGAACCg < 2:113362/90‑1 (MQ=255) ggCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCca > 1:113362/1‑90 (MQ=255) cttttCCCAGGGAGATTTCCCGCCGGCGCGTCCTGGTGGCCGAACCGCTAAAAAACACAAAAACGCCCCGCATTGACCCGCcactgacac < 2:206285/88‑1 (MQ=255) tttGCCAGCGAGATTTCCCGCCGGCGCGTCCGGGGGGCCGAACCGCTAAAAACCGCAAAAACGACCCGCATTGAACCGCcactgacactg < 1:21119/90‑1 (MQ=255) gCGAGATCTTCCGCCAGCGCGTACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTg > 1:591665/1‑90 (MQ=255) ggaTGTCCCGCCGGTGCGTCCGGGCGGCGGAACCCCTAAAAACCCCCAAAACGCCCCGCATAAACCCGCCACTGACACTGACCATTGAAc < 2:403692/89‑1 (MQ=255) cggcgcGTGCGGGGGGCGGGACCGCTAAAAAACGCAAAAACGACCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTg < 1:495075/88‑1 (MQ=255) gAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTa > 2:298938/1‑90 (MQ=255) ccaaaaaCGTCCCGCATTAAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGcc < 2:423783/87‑1 (MQ=255) aaaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATg > 2:309654/1‑90 (MQ=255) | TAACGAAATCGGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATG > NZ_CP009273/3214043‑3214208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |