Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2463082	2463190	109	2 [0]	[0] 3	BW25113_RS12270	hypothetical protein

CTTCATCAACACTGTCAATGTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTT  >  NZ_CP009273/2463013‑2463081                                                                     | cttcATCAACACTGTCAATGTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCAtttt  <  1:168479/69‑1 (MQ=255) cttcATCAACACTGTCAATGTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCAtttt  >  2:168479/1‑69 (MQ=255)                                                                     | CTTCATCAACACTGTCAATGTTTGCATCATTCTATCAAGAGCAAATAGTTATAATTTTCCTTCCATTTT  >  NZ_CP009273/2463013‑2463081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑