New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	4532499 =	0 (0.000)	12 (0.590)	8/146	0.8	68.6%	intergenic (+49/‑433)	fimE/fimA	type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
	?	NZ_CP009273	4532813 =	11 (0.540)					intergenic (+363/‑119)	fimE/fimA	type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA

TCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAA  >  NZ_CP009273/4532416‑4532547                                                                                    |                                                 atgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc                                            >  1:200207‑M1/84‑90 (MQ=255)   gggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa                                          <  2:268897‑M1/9‑1 (MQ=255)      cagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                       >  1:574080‑M1/79‑90 (MQ=255)      cagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                       >  2:151774‑M1/79‑90 (MQ=255)       agtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                       <  1:651964‑M1/12‑1 (MQ=255)       agtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                       >  2:651964‑M1/78‑89 (MQ=255)                       ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc                             <  1:306080‑M1/22‑1 (MQ=255)                       ttgttttgtaaacaagtttgactgccaacactgcacagttttcccccaaaaaatgaaacatTTGGGGCCAAACTGTCCATATc                             >  2:306080‑M1/62‑83 (MQ=255)                          ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt                   <  1:180457‑M1/32‑1 (MQ=255)                                           actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa  >  2:180457‑M1/42‑90 (MQ=255)                                                       gcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                       <  1:203955‑M1/12‑1 (MQ=255)                                                       gcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                       >  2:203955‑M1/30‑41 (MQ=255)                                                        cacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                       >  1:259789‑M1/29‑40 (MQ=255)                                                        cacagttttcccccaaaagatgaaacatTTGGGGCCAAAc                                       <  2:259789‑M1/12‑1 (MQ=255)                                                                                    |                                                 TCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAA  >  NZ_CP009273/4532416‑4532547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.