Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1972752	1972774	23	35 [0]	[1] 2	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC

TCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972669‑1972840                                                                                   |                                                                                          tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggt                                                                                    >  2:363722‑M1/1‑83 (MQ=255)    cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcg                                                                                 >  2:86455‑M1/1‑80 (MQ=255)      acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaa                                                                               <  1:168050‑M1/90‑13 (MQ=255)         cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaa                                                                            <  2:602665‑M1/90‑16 (MQ=255)              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  1:673177‑M1/90‑21 (MQ=255)              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  1:514470‑M1/90‑21 (MQ=255)                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatg                                                                >  1:584998‑M1/1‑63 (MQ=255)                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                              >  2:100032‑M1/1‑61 (MQ=255)                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                              >  1:398516‑M1/1‑61 (MQ=255)                        ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTCAAggaaggtgc                                                                                  >  1:203785‑M1/1‑60 (MQ=255)                        ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTCAAggaaggtgc                                                                                  <  2:203785‑M1/69‑10 (MQ=255)                                       tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct                                              <  1:363722‑M1/90‑46 (MQ=255)                                          ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  2:584998‑M1/90‑49 (MQ=255)                                          ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  2:568164‑M1/90‑49 (MQ=255)                                            aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                         <  1:629163‑M1/90‑51 (MQ=255)                                               gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      <  2:398516‑M1/90‑54 (MQ=255)                                               gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      <  1:100032‑M1/90‑54 (MQ=255)                                                      gCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag                               <  2:589486‑M1/90‑61 (MQ=255)                                                           tCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccct                                                                      >  1:150035‑M1/1‑25 (MQ=255)                                                           tCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccct                                                                      <  2:150035‑M1/46‑22 (MQ=255)                                                              cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                         <  1:103670‑M1/72‑51 (MQ=255)                                                              cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                         >  2:103670‑M1/1‑22 (MQ=255)                                                                                ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc     >  2:303058‑M1/1‑4 (MQ=255)                                                                                ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                         <  2:681993‑M1/54‑51 (MQ=255)                                                                                ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                         >  1:681993‑M1/1‑4 (MQ=255)                                                                                 tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    >  2:237939‑M1/1‑3 (MQ=255)                                                                                 tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    >  1:97378‑M1/1‑3 (MQ=255)                                                                                 tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    >  2:482472‑M1/1‑3 (MQ=255)                                                                                 tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    >  2:84012‑M1/1‑3 (MQ=255)                                                                                 tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    <  1:244605‑M1/90‑88 (MQ=255)                                                                                  aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt   >  1:144709‑M1/1‑2 (MQ=255)                                                                                  aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           >  2:298657‑M1/1‑2 (MQ=255)                                                                                  aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  1:298657‑M1/50‑49 (MQ=255)                                                                                   aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  >  2:351128‑M1/1‑1 (MQ=255)                                                                                   aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  >  1:16094‑M1/1‑1 (MQ=255)                                                                                   |                                                                                          TCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972669‑1972840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑