Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1973094	1973133	40	2 [0]	[0] 2	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC

GAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGA  >  NZ_CP009273/1973047‑1973093                                               | gagaATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGa  <  1:180430/47‑1 (MQ=255) gagaATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGa  >  2:180430/1‑47 (MQ=255)                                               | GAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGA  >  NZ_CP009273/1973047‑1973093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑