Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779389	2779429	41	2 [0]	[0] 2	BW25113_RS13825/BW25113_RS26005	tRNA‑Ile/alpha‑amylase family glycosyl hydrolase

ATTCGCAAAGTCGATACTCGCAGTCAACAAGCAAATGTTAATAATTAGCACTATCTAT  >  NZ_CP009273/2779331‑2779388                                                          | aTTCGCAAAGTCGATACTCGCAGTCAACAAGCAAATGTTAATAATTAGCActatctat  >  1:489151/1‑58 (MQ=255) aTTCGCAAAGTCGATACTCGCAGTCAACAAGCAAATGTTAATAATTAGCActatctat  <  2:489151/58‑1 (MQ=255)                                                          | ATTCGCAAAGTCGATACTCGCAGTCAACAAGCAAATGTTAATAATTAGCACTATCTAT  >  NZ_CP009273/2779331‑2779388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑