Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3448785	3448888	104	2 [1]	[1] 4	gspA/gspC	type II secretion system protein GspA/type II secretion system protein GspC

TAGACGCCAGGTTTGACGTTTCTCACACAACCAGGAAAGAATAACTTCTCTTCTCGTAGACATAGAACTTCCTGTTTTAATTATTGATTATCCTTAATCATAAAAATAATGTATGTATTTATTAATTAAAT  >  NZ_CP009273/3448695‑3448825                                                                                          |                                          tAGACGCCAGGTTTGACGTTTCTCACACAACCAGGAAAGAATAACTTCTCTTCTCGTAGACATAGAACTTCCTGTTTTAATTATTGATTa                                           <  2:700344/90‑1 (MQ=255)                                          tAACTTCTCTTCTCGTAGACATAGAACTTCCTGTTTTAATTATTGATTATCCTTAATCATAAAAATAATGTATGTATTTATTAATTAAAt  <  1:705192/90‑1 (MQ=255)                                                                                          |                                          TAGACGCCAGGTTTGACGTTTCTCACACAACCAGGAAAGAATAACTTCTCTTCTCGTAGACATAGAACTTCCTGTTTTAATTATTGATTATCCTTAATCATAAAAATAATGTATGTATTTATTAATTAAAT  >  NZ_CP009273/3448695‑3448825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑