Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3763164	3763185	22	2 [0]	[0] 2	BW25113_RS26240/yibH	Imm57 family immunity protein/HlyD family secretion protein

ATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAATTTTATTTAAAA  >  NZ_CP009273/3763105‑3763163                                                           | atGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAATTTTATTTaaaa  >  1:429532/1‑59 (MQ=255) atGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAATTTTATTTaaaa  <  2:429532/59‑1 (MQ=255)                                                           | ATGGCCATTGATGATTCTATAAAGTGCATCGATGAATGATAACTTAATTTTATTTAAAA  >  NZ_CP009273/3763105‑3763163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑