Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3790504	3790536	33	2 [0]	[0] 2	waaL	O‑antigen ligase

ACTGCTATAGTTTGCTTATTGTCACTAATTTTACGTGGCAGACAAGAAA  >  NZ_CP009273/3790455‑3790503                                                 | aCTGCTATAGTTTGCTTATTGTCACTAATTTTACGTGGCAGACAAGaaa  <  1:244069/49‑1 (MQ=255) aCTGCTATAGTTTGCTTATTGTCACTAATTTTACGTGGCAGACAAGaaa  >  2:244069/1‑49 (MQ=255)                                                 | ACTGCTATAGTTTGCTTATTGTCACTAATTTTACGTGGCAGACAAGAAA  >  NZ_CP009273/3790455‑3790503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑