Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3792820	3792866	47	2 [0]	[1] 5	waaZ	3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ

CTTGAAGTTTAATAAATGGAATTACATCGTAAGAA  >  NZ_CP009273/3792785‑3792819                                   | cTTGAAGTTTAATAAATGGAATTACATCGTAAGaa  >  1:213814/1‑35 (MQ=255) cTTGAAGTTTAATAAATGGAATTACATCGTAAGaa  <  2:213814/35‑1 (MQ=255)                                   | CTTGAAGTTTAATAAATGGAATTACATCGTAAGAA  >  NZ_CP009273/3792785‑3792819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑