Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3798327	3798497	171	2 [0]	[1] 2	[rfaS]	[rfaS]

CATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCA  >  NZ_CP009273/3798290‑3798326                                     | cATTGAGGTAATGCTCGATGAATAATCGCCCCAGCCa  <  1:391465/37‑1 (MQ=38) cATTGAGGTAATGCTCGATGAATAATCGCCCCAGCCa  >  2:391465/1‑37 (MQ=255)                                     | CATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCA  >  NZ_CP009273/3798290‑3798326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑