Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4272714	4272784	71	2 [0]	[1] 2	espX5	T3SS effector pentapeptide repeat protein EspX5

TTTATTAAGGTAAACTCTTCTCGTAATTCTATCGTCACATTTATTATTTGCATGT  >  NZ_CP009273/4272659‑4272713                                                       | tttATTAAGGTAAACTCTTCTCGTAATTCTATCGTCACATTTATTATTTGCAtgt  <  1:44550/55‑1 (MQ=255) tttATTAAGGTAAACTCTTCTCGTAATTCTATCGTCACATTTATTATTTGCAtgt  >  2:44550/1‑55 (MQ=255)                                                       | TTTATTAAGGTAAACTCTTCTCGTAATTCTATCGTCACATTTATTATTTGCATGT  >  NZ_CP009273/4272659‑4272713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑