Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	554180	554209	30	3 [1]	[0] 2	fimA	type 1 fimbrial major subunit FimA

CGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATA  >  NZ_CP009273/554114‑554203                                                                  |                         cGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGata  <  1:693865/90‑1 (MQ=255)                                aCCGGTACAAGTGCATCAGCAGGGCAAGCAAATGc                          <  1:649529/35‑1 (MQ=255)                                aCCGGTACAAGTGCATCAGCAGGGCAAGCAAATGc                          >  2:649529/1‑35 (MQ=255)                                                                  |                         CGTTCTTCATTTTTCTGCACGTTATAAAGGCACCGGTACAAGTGCATCAGCAGGGCAAGCAAATGCTGACGCGACTTTTATTATGAGATA  >  NZ_CP009273/554114‑554203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑