Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1059458	1059497	40	2 [0]	[0] 2	[yccE]	[yccE]

AGTAATATACATGGAATTAGTTGCACTGCAAATAATTATTTGAAAC  >  NZ_CP009273/1059498‑1059543 |                                              agtaATATACATGGAATTAGTTGCACTGCAAATAATTATTTGAAAc  >  1:636506/1‑46 (MQ=255) agtaATATACATGGAATTAGTTGCACTGCAAATAATTATTTGAAAc  <  2:636506/46‑1 (MQ=255) |                                              AGTAATATACATGGAATTAGTTGCACTGCAAATAATTATTTGAAAC  >  NZ_CP009273/1059498‑1059543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑