Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1663849	1663887	39	3 [1]	[0] 3	[ynfL]	[ynfL]

CAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTG  >  NZ_CP009273/1663888‑1663977 |                                                                                          cAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAAc       <  1:319375/85‑1 (MQ=255) cAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAAc       >  2:319375/1‑85 (MQ=255) cAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTg  >  2:436148/1‑90 (MQ=255) |                                                                                          CAGAACAATTCGATTTTCCTACCCTATGTATAAGCCTGATCTACAGGCATATTTAGCAAGGATTTCAAGTGAGCCGTACTACAACTGTTG  >  NZ_CP009273/1663888‑1663977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑