Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2376892	2376962	71	3 [1]	[1] 3	elaD	deubiquitinase ElaD

CATTGCGTGCACTAGGCTATGATAAAGAAAATTCACTTAAGCGTGTCATTAATAGTTTTAATTCTGAACTCATGGGAGAAATGTCGAATA  >  NZ_CP009273/2376961‑2377050   |                                                                                        cATTGCGTGCACTAGGCTATGATAAAGAAAATTCACTTAAGCGTGTCATTAATAGTTTTAATTCTGAACTCATGGGAGAAATGTCGaata  >  2:578105/1‑90 (MQ=255)   ttGCGTGCACTAGGCTATGATAAAGAAAATTCACTTAAGCgtg                                               <  1:640986/43‑1 (MQ=255)   ttGCGTGCACTAGGCTATGATAAAGAAAATTCACTTAAGCgtg                                               >  2:640986/1‑43 (MQ=255)   |                                                                                        CATTGCGTGCACTAGGCTATGATAAAGAAAATTCACTTAAGCGTGTCATTAATAGTTTTAATTCTGAACTCATGGGAGAAATGTCGAATA  >  NZ_CP009273/2376961‑2377050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑