Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3798120	3798134	15	2 [0]	[1] 3	rfaS	LPS core biosynthesis protein RfaS

TATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCAAAACTTTATGACAGTTAATATTTTTTAATA  >  NZ_CP009273/3798134‑3798223  |                                                                                         tatCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCAAAACTTTATGACAGTTAATATTTTTTAata  >  2:704525/1‑90 (MQ=255)  atCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAAc                                                 <  1:125434/42‑1 (MQ=255)  atCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAAc                                                 >  2:125434/1‑42 (MQ=255)  |                                                                                         TATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCAAAACTTTATGACAGTTAATATTTTTTAATA  >  NZ_CP009273/3798134‑3798223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑