| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 50 (0.840) | 28/164 | 0.5 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
GCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360019‑360193 | gattGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGATCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc < 2:1070540/88‑1 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCTAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 1:816571/90‑1 (MQ=255) gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt > 2:496727/1‑90 (MQ=255) ggCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGttt > 1:384211/1‑90 (MQ=255) ttACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg < 1:810051/90‑1 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggc < 1:378632/90‑1 (MQ=255) aGCCCCCCCACCCAGTGCAGGAGCTCCGATGATAAGCTGCAAAACATGAGAATTCCGACCCCCAATTCCTGGCAGTTTATGGCGGGCGTc < 2:1619388/90‑1 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGcc > 2:1235348/1‑90 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTcc < 1:388054/90‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCa > 1:213930/1‑55 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCa < 2:213930/55‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCGCccc‑cccccccccccg > 1:989349/1‑87 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGGCTGCccc‑cccccccccccg > 1:41980/1‑87 (MQ=38) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑cc > 1:649803/1‑76 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑cc < 2:649803/76‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTCCCCC‑CCCCCCCCCCGGCCgct > 2:7834/1‑88 (MQ=37) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCaa < 1:114753/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCaa < 2:310377/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGACCCCCAATTCCCGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCCCCCTCCGGGCCGTTGCTTCGCaa < 2:271000/90‑1 (MQ=21) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGc < 1:1792496/90‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTGCCCGCCCCCCCCCCGGCCCGTGGCTTTCAACCATTCAAATccccc > 2:1310762/1‑87 (MQ=12) agaATTCCGATCCCCAATTCCTGGCAGTTTATGCCGGGCGTCCTGCCCG‑CCACCCTCCggg > 1:846450/1‑61 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGCCGGGCGTCCTGCCCG‑CCACCCTCCggg < 2:846450/61‑1 (MQ=255) aaaaTTCCGATCCCCATTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCGCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc < 2:163297/88‑1 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTCCCCG‑CCACCCCCCCGGCCGTTGGCTCGCAACCCTTAAATACCCTCCccgccgg > 1:163297/1‑87 (MQ=9) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 2:193945/90‑1 (MQ=255) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:1255534/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:1657039/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:1724085/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:848553/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:936586/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:430638/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:39365/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:1699457/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:1480589/90‑1 (MQ=35) | GCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360019‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |