| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4532499 = | 18 (0.300) | 49 (0.920) | 32/146 | 0.3 | 68.5% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 29 (0.550) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
Only 100 of 135 total aligned reads displayed.
TAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTT > NZ_CP009273/4532411‑4532588 | taatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATT < 2:900645‑M1/90‑1 (MQ=255)taatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATT < 2:592751‑M1/90‑1 (MQ=255)atcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:1109710‑M1/1‑1 (MQ=255)atcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:395280‑M1/1‑1 (MQ=255) tcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 1:195436‑M1/89‑90 (MQ=255) tcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 2:1306911‑M1/89‑90 (MQ=255) tcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 2:1600030‑M1/89‑90 (MQ=255) tcgacatgggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 2:644781‑M1/89‑90 (MQ=255) ctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGG < 2:1711501‑M1/90‑1 (MQ=255) tcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGC > 1:962259‑M1/1‑90 (MQ=255) tcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGC > 2:671021‑M1/1‑90 (MQ=255) cATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCC > 1:1362739‑M1/1‑90 (MQ=255) gggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 2:611739‑M1/9‑1 (MQ=255) aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc < 2:605855/90‑1 (MQ=255) aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc < 1:671021/90‑1 (MQ=255) aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc < 1:208303/90‑1 (MQ=255) cagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc > 1:1378688‑M1/79‑90 (MQ=255) cagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc > 1:1469643‑M1/79‑90 (MQ=255) aCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 2:37026/90‑1 (MQ=255) cGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttg > 1:288859‑M1/1‑85 (MQ=255) gtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 1:604567‑M1/77‑78 (MQ=255) gtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTg < 2:1045462‑M1/14‑1 (MQ=255) gtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTg < 1:886120‑M1/14‑1 (MQ=255) aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact < 2:1004324‑M1/90‑9 (MQ=255) aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact < 2:533625‑M1/90‑9 (MQ=255) gttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc > 1:1483780‑M1/74‑90 (MQ=255) ttctgtacactttgttttgtaaacgtgtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 1:185067‑M1/18‑1 (MQ=255) ttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 2:90683‑M1/18‑1 (MQ=255) tctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc > 1:1418841‑M1/72‑83 (MQ=255) tctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc < 2:1418841‑M1/12‑1 (MQ=255) tgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 2:1099040‑M1/70‑90 (MQ=255) tgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:658923‑M1/70‑90 (MQ=255) tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag < 2:1500437‑M1/90‑14 (MQ=255) gtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc < 2:427957‑M1/22‑1 (MQ=255) aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag < 2:225235‑M1/90‑16 (MQ=255) aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:293216/90‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:1676318‑M1/27‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 2:1737371‑M1/63‑83 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat < 1:1737371‑M1/21‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:919425‑M1/28‑1 (MQ=255) ttgttttgtaaactagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata > 2:1379341‑M1/62‑90 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata < 2:1749829‑M1/29‑1 (MQ=255) ttanttnnnanaagagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata > 2:1480284‑M1/62‑90 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc > 2:241286‑M1/1‑69 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaataa < 1:1318408‑M1/30‑1 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaataa < 2:460468‑M1/30‑1 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 1:1529931‑M1/59‑60 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa < 1:846368‑M1/10‑1 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 2:846368‑M1/59‑68 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt < 2:1676409‑M1/32‑1 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgc > 1:812175‑M1/1‑64 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaaaatTTGGGGCCAAACTg > 1:1036105‑M1/54‑67 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaaaatTTGGGGCCAAACTg < 2:1036105‑M1/14‑1 (MQ=255) aaCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactt > 1:1035921‑M1/1‑54 (MQ=255) aaCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc > 2:1652906/1‑90 (MQ=255) aCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt > 1:804333‑M1/1‑53 (MQ=255) aCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtct > 2:1661661/1‑90 (MQ=255) ttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 2:1680741‑M1/18‑1 (MQ=255) ttATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:1661661/90‑1 (MQ=255) tATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttc < 2:961104‑M1/90‑41 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 2:1426551‑M1/42‑90 (MQ=255) ttGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttca < 2:1207920‑M1/90‑42 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 2:537253‑M1/40‑90 (MQ=255) taataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:1517621/83‑1 (MQ=255) taataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa > 2:1517621/1‑83 (MQ=255) aataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 2:979495‑M1/54‑12 (MQ=255) aaGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgt > 1:1741515‑M1/1‑39 (MQ=255) aaGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttc > 2:1135505‑M1/1‑39 (MQ=255) aaGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttc < 1:1135505‑M1/79‑41 (MQ=255) aGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgtt < 2:68451‑M1/90‑53 (MQ=255) t‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:1415774‑M1/1‑35 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa > 1:450685‑M1/25‑90 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa > 1:807245‑M1/25‑90 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaatcatcgcggacaaactttttcagtttatttgttggcttaa < 1:1025263‑M1/90‑60 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatctcggacaaactttttcagtttatttgttggcttaa < 2:824293‑M1/90‑60 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 2:1415774‑M1/90‑60 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 2:1341496‑M1/90‑60 (MQ=255) aCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 2:57012‑M1/90‑63 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa < 1:1533361‑M1/74‑1 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa < 2:70920/90‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa < 1:1360852‑M1/76‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa > 1:427957‑M1/15‑90 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa > 2:919425‑M1/15‑90 (MQ=255) aagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAg > 1:384992‑M1/13‑90 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgtt < 1:1647570‑M1/90‑72 (MQ=255) tgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc < 1:27518‑M1/82‑1 (MQ=255) aaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa > 1:94684‑M1/7‑90 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatct > 1:575707‑M1/1‑15 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttt > 1:171164‑M1/1‑15 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttt < 2:1366363‑M1/60‑46 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa > 2:1109710/1‑90 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctt < 1:1122665‑M1/90‑77 (MQ=255) acatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAAc > 2:1360852‑M1/5‑90 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACt < 1:112009/90‑1 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttat > 2:1385071‑M1/1‑11 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatt > 1:1233591‑M1/1‑10 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatt > 2:1220738‑M1/1‑10 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa > 2:848064‑M1/1‑10 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:848064‑M1/69‑60 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttattt > 1:1139070‑M1/1‑9 (MQ=255) | TAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTT > NZ_CP009273/4532411‑4532588 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |