| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4532507 | 18 (0.300) | 46 (0.870) | 27/146 | 0.4 | 67.1% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 29 (0.550) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
Only 100 of 138 total aligned reads displayed.
TAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATG > NZ_CP009273/4532419‑4532595 | gggcagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 2:611739‑M1/9‑1 (MQ=255) aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc < 1:671021/90‑1 (MQ=255) aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc < 2:605855/90‑1 (MQ=255) cagtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc > 1:1469643‑M1/79‑90 (MQ=255) gtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTg < 2:1045462‑M1/14‑1 (MQ=255) gtcgttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGG‑CCAAACTGt < 1:628302‑M1/14‑1 (MQ=255) aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact < 2:533625‑M1/90‑9 (MQ=255) gttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc > 1:1483780‑M1/74‑90 (MQ=255) ttctgtacactttgttttgtaaacgtgtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 1:185067‑M1/18‑1 (MQ=255) ttctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 2:90683‑M1/18‑1 (MQ=255) tctgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc > 1:1418841‑M1/72‑83 (MQ=255) tgtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:658923‑M1/70‑90 (MQ=255) tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag < 1:1279543‑M1/90‑14 (MQ=255) gtacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc < 2:427957‑M1/22‑1 (MQ=255) aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagag < 2:225235‑M1/90‑16 (MQ=255) aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata < 1:293216/90‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 2:1737371‑M1/63‑83 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat < 1:1737371‑M1/21‑1 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaat < 1:919425‑M1/28‑1 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata < 2:1749829‑M1/29‑1 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata < 2:1396873‑M1/29‑1 (MQ=255) ttanttnnnanaagagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaata > 2:1480284‑M1/62‑90 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagc > 2:241286‑M1/1‑69 (MQ=255) gaagagGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa > 1:432371/1‑90 (MQ=255) tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaataa < 1:1318408‑M1/30‑1 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 2:846368‑M1/59‑68 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa < 1:846368‑M1/10‑1 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt < 2:1676409‑M1/32‑1 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaaaatTTGGGGCCAAACTg > 1:1036105‑M1/54‑67 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaaaatTTGGGGCCAAACTg < 2:1036105‑M1/14‑1 (MQ=255) aaCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactt > 1:1035921‑M1/1‑54 (MQ=255) aaCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc > 2:1652906/1‑90 (MQ=255) aCTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaacttt > 1:804333‑M1/1‑53 (MQ=255) ttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 2:1680741‑M1/18‑1 (MQ=255) ttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa > 1:1680741‑M1/45‑62 (MQ=255) ttATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:1661661/90‑1 (MQ=255) tATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttc < 2:961104‑M1/90‑41 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa > 2:1426551‑M1/42‑90 (MQ=255) ttGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttca < 2:1207920‑M1/90‑42 (MQ=255) tgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 2:537253‑M1/40‑90 (MQ=255) taataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttta < 2:1362739‑M1/90‑47 (MQ=255) taataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa < 1:1517621/83‑1 (MQ=255) taataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCa > 2:1517621/1‑83 (MQ=255) aataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 2:979495‑M1/54‑12 (MQ=255) aataaAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:979495‑M1/1‑43 (MQ=255) aaGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttc < 1:1135505‑M1/79‑41 (MQ=255) aaGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttc > 2:1135505‑M1/1‑39 (MQ=255) aGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgtt < 2:68451‑M1/90‑53 (MQ=255) gcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat < 2:419101‑M1/61‑1 (MQ=255) t‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:1415774‑M1/1‑35 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa > 1:807245‑M1/25‑90 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa > 1:450685‑M1/25‑90 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaatcatcgcggacaaactttttcagtttatttgttggcttaa < 1:1025263‑M1/90‑60 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatctcggacaaactttttcagtttatttgttggcttaa < 2:824293‑M1/90‑60 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 2:1415774‑M1/90‑60 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 2:1053647‑M1/90‑60 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 2:1341496‑M1/90‑60 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 2:1318408‑M1/22‑90 (MQ=255) aCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatat < 2:57012‑M1/90‑63 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc > 1:826040/1‑90 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc > 1:890552/1‑90 (MQ=255) aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattc < 1:241286‑M1/90‑65 (MQ=255) ccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa < 1:1533361‑M1/74‑1 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa < 2:70920/90‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa < 1:1360852‑M1/76‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa > 2:919425‑M1/15‑90 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa > 1:379315‑M1/15‑90 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaaa > 2:867273‑M1/15‑90 (MQ=255) aagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAg > 1:384992‑M1/13‑90 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgtt < 1:1542592‑M1/90‑72 (MQ=255) taCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgtt < 1:1647570‑M1/90‑72 (MQ=255) tgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc < 1:27518‑M1/82‑1 (MQ=255) aaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa > 1:94684‑M1/7‑90 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatct > 1:575707‑M1/1‑15 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttt > 1:171164‑M1/1‑15 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttt > 1:1366363‑M1/1‑15 (MQ=255) aGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagttt < 2:1366363‑M1/60‑46 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa > 2:1109710/1‑90 (MQ=255) gACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctt < 1:1122665‑M1/90‑77 (MQ=255) catTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACt > 2:1676318‑M1/4‑90 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACt < 1:1752187/90‑1 (MQ=255) aaTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttat > 2:1385071‑M1/1‑11 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatt > 2:1220738‑M1/1‑10 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaa < 1:848064‑M1/69‑60 (MQ=255) aTTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgtt > 2:1462227‑M1/1‑10 (MQ=255) ttGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttattt > 1:1139070‑M1/1‑9 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGTATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt > 1:1284328‑M1/1‑90 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt > 1:1248954‑M1/1‑90 (MQ=255) ggggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttat < 1:63384‑M1/90‑84 (MQ=255) ggggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttat > 2:1297326‑M1/1‑7 (MQ=255) gggCCAttttgactcatagaggaaagcatcgcggaaaaattttttcagtttattgttggcttaatattctattgttatctttatttatag < 2:697218‑M1/90‑85 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGa > 2:1792277‑M1/1‑90 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatag > 1:1265093‑M1/1‑5 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatag < 1:688417‑M1/90‑86 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatag < 1:1547772‑M1/90‑86 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatag < 1:959805‑M1/90‑86 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctatt < 1:1234047‑M1/73‑69 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctatt > 2:1234047‑M1/1‑5 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATg > 2:432371‑M1/1‑90 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATg > 1:281738‑M1/1‑90 (MQ=255) | TAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATG > NZ_CP009273/4532419‑4532595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |