| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3031193 | 35 (0.590) | 3 (0.060) | 3/148 | 3.7 | 8.6% | coding (273/1734 nt) | recJ | single‑stranded‑DNA‑specific exonuclease RecJ |
| ? | NZ_CP009273 | = 3031201 | 32 (0.590) | coding (265/1734 nt) | recJ | single‑stranded‑DNA‑specific exonuclease RecJ | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCC > NZ_CP009273/3031115‑3031289 | tAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGt > 1:1119022/1‑90 (MQ=255) gTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGcc > 1:1453079/1‑90 (MQ=255) aaCGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGt < 1:212518/90‑1 (MQ=255) cAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGAc < 1:1731241/90‑1 (MQ=255) gTCGATATTGGCGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGGGCTGGTCGCGCCGCCGGCGTCGAAATCACCGACCACaat > 2:576537/1‑90 (MQ=255) gTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACaat < 1:124367/90‑1 (MQ=255) gTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACaat > 2:609075/1‑90 (MQ=255) gTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACaat > 2:1781256/1‑90 (MQ=255) gTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACaat > 2:1682252/1‑90 (MQ=255) gTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACaat < 1:483139/90‑1 (MQ=255) ttGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCcgc > 2:924728/1‑90 (MQ=255) gctgcAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGt > 1:1165401/1‑90 (MQ=255) aaCCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCg > 1:202394/1‑68 (MQ=255) aaCCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCg < 2:202394/68‑1 (MQ=255) aaCCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACaata < 1:583251/77‑1 (MQ=255) aaCCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACaata > 2:583251/1‑77 (MQ=255) aaCCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCtt < 2:1217948/90‑1 (MQ=255) aaCCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCtt > 2:1319298/1‑90 (MQ=255) aaCCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCtt > 1:165446/1‑90 (MQ=255) cAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTcgc > 1:815351/1‑90 (MQ=255) cgagcgCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGaaa < 2:629687/90‑1 (MQ=255) agcgCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAg < 1:982540/90‑1 (MQ=255) gcgcATCGCCAGCACGGCTCTA‑AG‑CGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTAGCGAAAAGc > 1:73103/1‑90 (MQ=37) gcgcATCGCCAGCAC‑GGC‑TCTAAGCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTAGCGAAAAGc < 2:73103/90‑1 (MQ=37) gcgcATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGc > 1:460510/1‑90 (MQ=255) cgcATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCg < 1:255154/90‑1 (MQ=255) gcATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGt < 1:1286930/90‑1 (MQ=255) gcATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGt < 2:1165401/90‑1 (MQ=255) cATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTTGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGtt > 2:1383604/1‑90 (MQ=255) cGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTa < 1:609075/90‑1 (MQ=255) gCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTaa < 1:1781256/90‑1 (MQ=255) tAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAAc < 2:1453079/90‑1 (MQ=255) gCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGcc > 1:946128/1‑90 (MQ=255) | TAAGCCGTAACCGTCTTCGAAACGGTTTGGTACCAGGTAGTCGATATTGCTGCAACCAAGCGAGCGCATCGCCAGCAC‑GCT‑TAGAGCCGTGCTGGTCGCGCCGTCGGCGTCGAAATCACCGACCACAATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCC > NZ_CP009273/3031115‑3031289 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |