| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3769084 | 72 (1.210) | 4 (0.080) | 3/144 | 3.6 | 5.2% | coding (153/588 nt) | mtlR | mannitol operon repressor MtlR |
| ? | NZ_CP009273 | = 3769168 | 82 (1.570) | coding (237/588 nt) | mtlR | mannitol operon repressor MtlR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGA > NZ_CP009273/3769079‑3769254 | gTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTa > 1:710391/1‑90 (MQ=255) aGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCg < 2:547368/90‑1 (MQ=255) tGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCg > 2:1699370/1‑90 (MQ=255) gAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGt > 1:1037823/1‑90 (MQ=255) gAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGt > 1:839105/1‑90 (MQ=255) aGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGGGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTc > 1:837935/1‑90 (MQ=255) gCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCg > 2:817169/1‑90 (MQ=255) gCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCg > 1:1372851/1‑90 (MQ=255) ggTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCt < 2:1195247/90‑1 (MQ=255) tAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTgg < 2:935279/90‑1 (MQ=255) tcttctGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGa > 1:870217/1‑90 (MQ=255) tcttctGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGa < 1:82548/90‑1 (MQ=255) cttctGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGAt > 2:1149902/1‑90 (MQ=255) gCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATTCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgt > 1:935538/1‑90 (MQ=255) gCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgt > 1:901010/1‑90 (MQ=255) cTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg < 1:179628/90‑1 (MQ=255) cTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCtgtg < 1:426137/90‑1 (MQ=255) ttCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTTCGCTGGGCGATCTTTCTGTGc > 2:1571137/1‑90 (MQ=255) ttCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTa > 2:442861/1‑45 (MQ=255) ttCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTa < 1:442861/45‑1 (MQ=255) ttCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTaaaa > 1:556322/1‑90 (MQ=255) ttCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTaaaa > 2:536294/1‑90 (MQ=255) ccGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCt < 1:1282241/72‑1 (MQ=255) ccGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCt > 2:1282241/1‑72 (MQ=255) ccGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACt < 2:556322/90‑1 (MQ=255) gCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCa > 2:1030745/1‑90 (MQ=255) aaaGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGa < 2:867701/65‑1 (MQ=255) aaaGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGa > 1:867701/1‑65 (MQ=255) aaGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCAttt < 1:676269/90‑1 (MQ=255) gACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTAc < 1:1384358/90‑1 (MQ=255) gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCg > 1:1773681/1‑51 (MQ=255) gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCg < 2:1773681/51‑1 (MQ=255) gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACggg > 1:1475299/1‑90 (MQ=255) gATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACggg > 1:1733386/1‑90 (MQ=255) gcgGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGc < 1:42590/90‑1 (MQ=255) cgGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATc > 2:1715663/1‑54 (MQ=255) cgGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATc < 1:1715663/54‑1 (MQ=255) cgGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCg > 2:1121509/1‑90 (MQ=255) gTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTc > 2:588583/1‑90 (MQ=255) gTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGGGTTTAAAACTCATTTACGGGTTGGGCGTCATTaa < 1:1732588/90‑1 (MQ=255) tATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAAc > 2:1163064/1‑90 (MQ=255) aTGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTgg < 1:710735/39‑1 (MQ=255) aTGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTgg > 2:710735/1‑39 (MQ=255) aTGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAAcc < 1:817304/90‑1 (MQ=255) tGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCg > 2:2436/1‑90 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGc > 2:622753/1‑38 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGc > 2:1160275/1‑38 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGc < 1:1160275/38‑1 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGc < 1:622753/38‑1 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTggg < 1:1600770/76‑1 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTggg > 2:1600770/1‑76 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc > 1:72875/1‑90 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc > 1:280872/1‑90 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc < 1:1030745/90‑1 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc < 2:1265296/90‑1 (MQ=255) cTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc < 1:1401064/90‑1 (MQ=255) cTGTAGAACCGTTACTCGACGGAGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc < 2:1560160/90‑1 (MQ=255) tGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCa < 1:1149902/90‑1 (MQ=255) tGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCa < 2:1753485/90‑1 (MQ=255) gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg < 1:704331/90‑1 (MQ=255) gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg > 1:720075/1‑90 (MQ=255) gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg > 1:822824/1‑90 (MQ=255) gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg > 2:788490/1‑90 (MQ=255) gTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAg < 1:513193/90‑1 (MQ=255) tAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAgg < 1:1390031/90‑1 (MQ=255) gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc < 1:983340/85‑1 (MQ=255) gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc > 2:983340/1‑85 (MQ=255) gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGaa > 1:703963/1‑90 (MQ=255) gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGaa > 1:1676575/1‑90 (MQ=255) gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGaa > 2:328537/1‑90 (MQ=255) gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGaa > 2:1112151/1‑90 (MQ=255) gAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGaa > 1:957763/1‑90 (MQ=255) aCCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATa > 1:1453930/1‑90 (MQ=255) ccGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATAc < 2:678302/90‑1 (MQ=255) ccGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATAc > 2:769272/1‑90 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTAc < 2:994088/58‑1 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTAc > 1:994088/1‑58 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc < 2:421243/80‑1 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGcc > 1:421243/1‑80 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa > 1:1211334/1‑90 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa > 2:161499/1‑90 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa > 1:1378293/1‑90 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa > 2:982146/1‑90 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa > 1:1557208/1‑90 (MQ=255) gTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa > 1:146787/1‑90 (MQ=255) tACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa < 1:88031/88‑1 (MQ=255) tACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGa > 2:88031/1‑88 (MQ=255) | GTCGAGCTCCTGACCGAGGCGGTAAATCTTCTGGTGCTTCAGGTATTCCGCAAAGACGATTACGCGGTGAAGTATGCTGTAGAACCGTTACTCGACGGCGATGGTCCGCTGGGCGATCTTTCTGTGCGTTTAAAACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGA > NZ_CP009273/3769079‑3769254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |