| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3622994 | 13 (0.990) | 5 (0.360) +TGC |
3/138 | 1.0 | 26.1% | coding (969/1068 nt) | yhiI | HlyD family efflux transporter periplasmic adaptor subunit |
| ? | NZ_CP009273 | 3622995 = | 15 (1.030) | coding (968/1068 nt) | yhiI | HlyD family efflux transporter periplasmic adaptor subunit | |||||
CACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCATCGCTGGTTTCGACGGTTTTTGGCG > NZ_CP009273/3622910‑3623082 | caccacGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgc > 2:99127‑M1/1‑85 (MQ=255)caccacGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgc < 1:99127‑M1/88‑4 (MQ=255) acGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgctgctgc < 2:128410‑M1/90‑10 (MQ=255) aGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGt > 1:311514/1‑90 (MQ=255) gtcAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTc < 1:343190/90‑1 (MQ=255) ggCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGt > 1:260961/1‑90 (MQ=255) cACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgctgctgctggagtaattccggt > 2:87061‑M1/1‑66 (MQ=255) attcaCCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGAc > 1:258280/1‑90 (MQ=255) attcaCCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGAc < 2:258280/90‑1 (MQ=255) aCCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCgg < 1:358174/90‑1 (MQ=255) aCCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCgg < 1:138649/90‑1 (MQ=255) gCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgctgctgctggagtaattccggtgggatacgcgctttgacgcgga < 1:87061‑M1/90‑47 (MQ=255) aCGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGGGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGc < 2:392161/90‑1 (MQ=255) aCGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGc < 2:307726/90‑1 (MQ=255) gCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCg > 2:171933/1‑90 (MQ=255) cGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACAt > 2:244659/1‑67 (MQ=255) cGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACAt < 1:244659/67‑1 (MQ=255) cATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCATCGCTGGTTTCGACgg > 2:281162/1‑90 (MQ=255) ttCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCATCGCTGGTTTCGACGGtttt < 2:260961/90‑1 (MQ=255) gATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCATCGCTGGTTTCGACGGTTTTTGGCg < 1:171933/90‑1 (MQ=255) | CACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCATCGCTGGTTTCGACGGTTTTTGGCG > NZ_CP009273/3622910‑3623082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |