New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1391494	NA (NA)	11 (0.770)	7/158	0.5	100%	intergenic (+145/‑128)	BW25113_RS06980/ynaJ	IS5‑like element IS5 family transposase/DUF2534 family protein
	?	NZ_CP009273	1972747 =	0 (0.000)					intergenic (‑293/‑487)	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC

AACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCG  >  NZ_CP009273/1972658‑1972812                                                                                          |                                                                  gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                   <  1:287770‑M2/1‑1 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccttcc                                                                   <  1:205693‑M2/1‑1 (MQ=255)  catttactggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcct                                                                  <  1:188684‑M2/2‑1 (MQ=255)   atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt                                                                 <  1:342961‑M2/3‑1 (MQ=255)         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATa                                                           <  2:26101‑M2/9‑1 (MQ=255)         gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATa                                                           <  2:290816‑M2/9‑1 (MQ=255)                                  aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACttttgtttt                                  <  2:20171‑M2/34‑1 (MQ=255)                                       atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCATAACATAAATGTATAAGTCATACTTTTGTTTTGGgtg                             <  1:22870‑M2/39‑1 (MQ=255)                                              gactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTc                                               <  1:46348‑M2/21‑1 (MQ=255)                                              gactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTc                                               >  2:46348‑M2/45‑65 (MQ=255)                                                  gagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                   >  1:301801‑M2/41‑41 (MQ=255)                                                  gagtcagccgagaagaatttccccgcttattcgcaccttcc                                                                   <  2:301801‑M2/1‑1 (MQ=255)                                                            agaagaatttccccgcttattcgcaccttcCTTAACATa                                                           >  1:88691‑M2/31‑39 (MQ=255)                                                            agaagaatttccccgcttattcgcaccttcCTTAACATa                                                           <  2:88691‑M2/9‑1 (MQ=255)                                                                  atttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg  >  1:369696‑M2/25‑90 (MQ=255)                                                                                          |                                                                  AACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCG  >  NZ_CP009273/1972658‑1972812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.