Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1676371	1676386	16	3 [1]	[0] 2	ydgC/rstA	GlpM family protein/two‑component system response regulator RstA

CTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCG  >  NZ_CP009273/1676288‑1676377                                                                                   |        cTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAgcg  <  2:264927/90‑1 (MQ=255)                                             tgatgaAAACTTGTTTAGAAACGATTGATAGTAAGTaaa         <  1:186984/39‑1 (MQ=255)                                             tgatgaAAACTTGTTTAGAAACGATTGATAGTAAGTaaa         >  2:186984/1‑39 (MQ=255)                                                                                   |        CTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCG  >  NZ_CP009273/1676288‑1676377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑