Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779433	2779483	51	4 [0]	[1] 2	BW25113_RS13825/BW25113_RS26005	tRNA‑Ile/alpha‑amylase family glycosyl hydrolase

ATCATCGATTCAATGATACTTTGTAATGATTTTGTATCTA  >  NZ_CP009273/2779393‑2779432                                        | atcatcAATTCAATGATACTTTGTAATGATTTTGTATCta  >  1:227773/1‑40 (MQ=39) atcatcAATTCAATGATACTTTGTAATGATTTTGTATCta  >  1:230019/1‑40 (MQ=39) atcatcAATTCAATGATACTTTGTAATGATTTTGTATCta  <  2:227773/40‑1 (MQ=39) atcatcAATTCAATGATACTTTGTAATGATTTTGTATCta  <  2:230019/40‑1 (MQ=39)                                        | ATCATCGATTCAATGATACTTTGTAATGATTTTGTATCTA  >  NZ_CP009273/2779393‑2779432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑