Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2178563	2178592	30	2 [0]	[1] 2	thiM	hydroxyethylthiazole kinase

ACAAGGCACTGGCGATAGCCGCAAACTGACTGGCCTCTTCGGTTTCGATAACCATCGCTGGCGATGCACCGAGCGCCAGCAAGGTATTGGCGGTAAAGGTTTGC  >  NZ_CP009273/2178579‑2178682               |                                                                                          acaaGGCACTGGCGATAGCCGCAAACTGACTGGCCTCTTCGGTTTCGATAACCATCGCTGGCGATGCACCGAGCGCCAGCAAGGTATTgg                >  1:225187/1‑90 (MQ=255)               aTAGCCGCAAACTGACTGGCCTCTTCGGTTTCGATAACCATCGCTGGCTATGCACCGAGCGCCAGCAAGGTATTGGCGGGAAAAGTTTgt  >  1:344050/1‑89 (MQ=255)               |                                                                                          ACAAGGCACTGGCGATAGCCGCAAACTGACTGGCCTCTTCGGTTTCGATAACCATCGCTGGCGATGCACCGAGCGCCAGCAAGGTATTGGCGGTAAAGGTTTGC  >  NZ_CP009273/2178579‑2178682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑