Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3798213	3798247	35	2 [1]	[0] 2	rfaS	LPS core biosynthesis protein RfaS

CAACACTGTCATTAATGATAATTATGTCATCTTTTTTAATATCATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCA  >  NZ_CP009273/3798248‑3798326 |                                                                               caacaCTGTCATTAATGATAATTATGTCATCTTTTTTAATATCATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCa  >  1:49088/1‑79 (MQ=255) caacaCTGTCATTAATGATAATTATGTCATCTTTTTTAATATCATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCa  <  2:49088/79‑1 (MQ=255) |                                                                               CAACACTGTCATTAATGATAATTATGTCATCTTTTTTAATATCATTGAGGTAATGCTTGATGAATAATCGCCCCAGCCA  >  NZ_CP009273/3798248‑3798326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑