| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 337,551 | 0 | C | G | 54.5% | 3.7 / 10.2 | 11 | A239G (GCG→GGG) | yahJ | amidohydrolase family protein |
| Reads supporting (aligned to +/- strand): ref base C (1/4); new base G (6/0); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGAAATCGTCGCCTTCCCGCAGCACGGTTTGCTGCTGTCGAAATCTGAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGCGCATTACGTCGGCGGCCTGGACCCGACCAGTGTTGATGGCGCGATGGAAAAATCCCTCGACACCATGTTCCAGATTGCGCTGGAC > NZ_CP009273/337470‑337636 | gtgAAATCGTCGCCTTCCCGCAGCACGGTTTGCTGCTGTCGAAATCTGAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGGGCCTTACg > 2:227482/1‑90 (MQ=255)gtgAAATCGTCGCCTTCCCGCAGCACGGTTTGCTGCTGTCGAAATCTGAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGGGCATTACg > 2:267447/1‑90 (MQ=255) gcagcaCGGTTTGCTGCTGTCGAAATCTGAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGCGCATTACGTCGGCGGCCTGGACCCGAc < 2:256347/90‑1 (MQ=255) agcaCGGTTTGCTGCTGTCGAAATCTGAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGCGCATTACGTCGGCGGCCTGGACCCGACCa < 1:236465/90‑1 (MQ=255) gcaCGGTTTGCTGCTGTCGAAATCTGAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGCGCATTACGTCGGCGGCCTGGAACCCGCCAg > 2:83541/1‑90 (MQ=255) ctgctgTCGAAATCTGAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGGGCATTACGTCGGGGGCCTGGACCCGACCCGTGTTGATggg > 2:185757/1‑89 (MQ=255) gAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGGGCATTACGTCGGCGGCCTGGACCCGACCCGGGTTTATGGGGCGATGGAAAAAAcc > 2:378915/1‑90 (MQ=255) gAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGGGCATTACGTCGGCGGCCCGGGCCCCGCCCGGGTTGGTGGGGCGGTGGAAAAAAcc > 1:447116/1‑90 (MQ=255) gAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGGGCATTACGTCGGCGGCCCGGACCCCACCAGGGTTGGTGGCGCGATGGGAAAAAcc > 2:440861/1‑90 (MQ=255) ccTTTAATGCGTGAAGCGATGCAGGCGGGGGCGCATTACGTCGGCGGCCTGGACCCGACCAGTGTTGATGGCGCGATGGAAAAATCCCTc < 1:267447/90‑1 (MQ=255) aaTGCGTGAAGCGATGCAGGCGGGGGCGCATTACGTCGGCGGCCTGGACCCGACCAGTGTTGATGGCGCGATGGAAAAATCCCTCGacac < 1:440861/90‑1 (MQ=255) ggggggCATTACGTCGGCGGCCTGGGCCCCGCCAGTGTTGATGGGGCGGTGGAAAAAACCCCCGACACCCTGGTCCAGATTGCGCTGGAc > 1:325363/1‑90 (MQ=255) | GTGAAATCGTCGCCTTCCCGCAGCACGGTTTGCTGCTGTCGAAATCTGAACCTTTAATGCGTGAAGCGATGCAGGCGGGGGCGCATTACGTCGGCGGCCTGGACCCGACCAGTGTTGATGGCGCGATGGAAAAATCCCTCGACACCATGTTCCAGATTGCGCTGGAC > NZ_CP009273/337470‑337636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |