| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,312,717 | 0 | C | T | 50.0% | ‑5.6 / 14.1 | 12 | L443L (TTG→TTA) | trpCF | bifunctional indole‑3‑glycerol‑phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base T (3/3); total (6/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATGTTGTCATTGTTCCTTTCCTTAATATGCGCGCAGCGTCTGGAAAACCGAGGCCAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCAC > NZ_CP009273/1312662‑1312803 | aaTGTTGTCATTGTTCCTTTCCTTAATATGCGCGCAGCGTCTGGAAAACCGAGGCCAAAAGACGTGCGTCTTTGATGCCCGGTTGCTAct > 1:416317/1‑90 (MQ=255) gtCATTGTTCCTTTCCTTAATATGCGCGCAGCGTCTGGAAAACCGAGGCCAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTAcag > 2:260277/1‑90 (MQ=255) cATTGTTCCTTTCCTTAATATGCGCGCAGCGTCTGGAAAACCGAGGCTAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTAcagca > 1:165741/1‑90 (MQ=255) cATTGTTCCTTTCCTTAATATGCGCGCAGCGTCTGGAAAACCGAGGCTAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTAcagca > 1:404804/1‑90 (MQ=255) cATTGTTCCTTTCCTTAATATGCGCGCAGCGTCTGGAAAACCGAGGCTAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTAcagca > 1:90765/1‑90 (MQ=255) ttcctttcctTAATATGCGCGCAGCGTCTGGAAAACCGAGGCCAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTAcagc > 1:102705/1‑84 (MQ=255) ttcctttcctTAATATGCGCGCAGCGTCTGGAAAACCGAGGCCAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTAcagc < 2:102705/84‑1 (MQ=255) cGAGGCCAAAAGACGTGCGTCTTTGATGCCCGGTTGCTACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTc < 2:416317/90‑1 (MQ=255) aGGCCAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCa < 1:166922/90‑1 (MQ=255) ggCTAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCAc < 2:165741/90‑1 (MQ=255) ggCTAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCAc < 2:404804/90‑1 (MQ=255) ggCTAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCAc < 2:90765/90‑1 (MQ=255) | AATGTTGTCATTGTTCCTTTCCTTAATATGCGCGCAGCGTCTGGAAAACCGAGGCCAAAAGACGTGCGTCTTTGATGCCCGGTTGCGACTCTACAGCAGAATTAAAATCAAGTCCGGCGCAGCCGGTTTGTGCCGCTTCCAC > NZ_CP009273/1312662‑1312803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |