| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,794,499 | 0 | G | A | 50.0% | ‑5.1 / 13.1 | 12 | R133C (CGT→TGT) | infC | translation initiation factor IF‑3 |
| Reads supporting (aligned to +/- strand): ref base G (2/4); new base A (3/3); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.46e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGGAGTTTT > NZ_CP009273/1794437‑1794569 | ttGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTACGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGc < 2:75725/90‑1 (MQ=255) tGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCt < 1:446638/90‑1 (MQ=255) tGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCt < 1:92000/90‑1 (MQ=255) aCCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCg < 2:336466/90‑1 (MQ=255) gATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGTAg > 1:185034/1‑90 (MQ=255) gATTTGCTGGTGCGCCATCTCACAACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCg < 1:137865/87‑1 (MQ=255) gATTTGCTGGTGCGCCATCTCACAACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCg < 1:22132/87‑1 (MQ=255) gATTTGCTGGTGCGCCATCTCACAACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCg < 1:470021/87‑1 (MQ=255) gATTTGCTGGTGCGCCATCTCACAACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCg > 2:137865/1‑87 (MQ=255) gATTTGCTGGTGCGCCATCTCACAACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCg > 2:22132/1‑87 (MQ=255) gATTTGCTGGTGCGCCATCTCACAACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCg > 2:470021/1‑87 (MQ=255) tGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGGAGtttt > 1:256644/1‑90 (MQ=255) | TTGCAAATCGTCTTTCACGCGATTAAGCACTTCCATACCGATTTGCTGGTGCGCCATCTCACGACCGCGGAAACGCAGCGTGATTTTGGCTTTATCACCCTCTTCGAGAAAGCGAATCAGGCTGCGGAGTTTT > NZ_CP009273/1794437‑1794569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |