| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,743,316 | T→G | V167V (GTA→GTC) | ydhT ← | protein YdhT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,743,316 | 0 | T | G | 100.0% | 57.2 / NA | 16 | V167V (GTA→GTC) | ydhT | protein YdhT |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (10/6); total (10/6) | |||||||||||
GGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGTACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCGAAGAATTACCGGTTACAGCAACCCGTG > NZ_CP009273/1743235‑1743398 | ggCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCAt > 2:453184/1‑90 (MQ=255) aaGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCa < 1:351016/90‑1 (MQ=255) gCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAATCCGa < 2:229981/90‑1 (MQ=255) ggTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAg > 1:431373/1‑90 (MQ=255) ccATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCgctg > 2:317096/1‑90 (MQ=255) cTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAAt < 1:172915/62‑1 (MQ=255) cTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAAt < 1:201932/62‑1 (MQ=255) cTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAAt > 2:172915/1‑62 (MQ=255) cTGGCGACATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAAt > 2:201932/1‑62 (MQ=255) cATGACACCGTTCACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCgaag > 2:67318/1‑90 (MQ=255) cACCCAATGTACAAACGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCGAAGAATTACCGGTTa < 2:119433/90‑1 (MQ=255) aaaCGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCGAAGAATTACCGGTTACAGCAACCCGTg > 1:127081/1‑90 (MQ=255) aaaCGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCGAAGAATTACCGGTTACAGCAACCCGTg < 2:166399/90‑1 (MQ=255) aaaCGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCGAAGAATTACCGGTTACAGCAACCCGTg > 2:380646/1‑90 (MQ=255) aaaCGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCGAAGAATTACCGGTTACAGCAACCCGTg > 2:427147/1‑90 (MQ=255) aaaCGCGGACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCGAAGAATTACCGGTTACAGCAACCCGTg > 2:442162/1‑90 (MQ=255) | GGCGTTTGCGCCAAAGCTGGCGATTTGCACCAGGTCACCATTACTGGCGACATGACACCGTTCACCCAATGTACAAACGCGTACTCGCATTCCGGTATTCGCAATCCGACTGCTATCTCCAGCGCTGCTTATCCGCGAAGAATTACCGGTTACAGCAACCCGTG > NZ_CP009273/1743235‑1743398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |