| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,383 | Δ1 bp | coding (7/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,380 | 0 | A | . | 95.8% | 90.8 / ‑1.1 | 24 | coding (4/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (12/11); total (12/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 | |||||||||||
GGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTT > NZ_CP009273/1613299‑1613463 | ggTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCa > 2:223543/1‑90 (MQ=255) attcattTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGt < 1:521835/90‑1 (MQ=255) ttGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATg > 1:71435/1‑90 (MQ=255) ataCTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAattat < 2:487137/90‑1 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt > 2:436600/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt > 2:235746/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt > 1:213547/1‑90 (MQ=255) gggCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt < 1:261870/90‑1 (MQ=255) atCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATcc > 1:229821/1‑90 (MQ=255) ccccTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat < 1:235746/90‑1 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATg > 2:629481/1‑90 (MQ=255) cTGCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATg > 2:589567/1‑90 (MQ=255) gCAACTAATTACTTGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGt < 1:614718/90‑1 (MQ=255) aaTTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATc < 1:187880/90‑1 (MQ=255) tGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat < 2:198139/72‑1 (MQ=255) tGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCat > 1:198139/1‑72 (MQ=255) tGCCAGGGCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGaagaaa < 2:213547/90‑1 (MQ=255) gggCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCg > 2:79135/1‑90 (MQ=255) gggCAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCg > 2:415232/1‑90 (MQ=255) cAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCt < 2:119514/90‑1 (MQ=255) cAACTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCt < 1:460574/90‑1 (MQ=255) aaCTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt < 1:75806/51‑1 (MQ=255) aaCTAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGt > 2:75806/1‑51 (MQ=255) tAATGTG‑AAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCtt < 1:109382/90‑1 (MQ=255) | GGTCAATTCATTCATTTGACTTATACTTGCCTGGGCAATATTATCCCCTGCAACTAATTACTTGCCAGGGCAACTAATGTGAAAAGTACCAGCGATCTGTTCAATGAAATTATTCCATTGGGTCGCTTAATCCATATGGTTAATCAGAAGAAAGATCGCCTGCTT > NZ_CP009273/1613299‑1613463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |