Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1972752	1972755	4	31 [0]	[0] 3	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC

CGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972667‑1972840                                                                                     |                                                                                          cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                      >  1:299447‑M1/1‑85 (MQ=255)               caTACACCGGA‑GGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  1:484039‑M1/90‑21 (MQ=255)                aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  2:358810‑M1/90‑21 (MQ=255)                aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  1:470461‑M1/90‑21 (MQ=255)                aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGAGGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  1:174994‑M1/90‑21 (MQ=255)                      cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatat                                                                 <  2:246526‑M1/90‑27 (MQ=255)                         aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                              >  2:245697‑M1/1‑61 (MQ=255)                         aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                              >  2:306375‑M1/1‑61 (MQ=255)                         aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaa                                                                                       >  2:633744‑M1/1‑61 (MQ=255)                         aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaa                                                                                       <  1:633744‑M1/65‑5 (MQ=255)                          ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgaga                                                             >  2:52144‑M1/1‑60 (MQ=255)                          ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgaga                                                             >  1:96516‑M1/1‑60 (MQ=255)                               gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                        >  2:445176‑M1/1‑55 (MQ=255)                               gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                        >  2:438904‑M1/1‑55 (MQ=255)                                                 gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      <  2:514415‑M1/90‑54 (MQ=255)                                                        gCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag                               <  1:438904‑M1/90‑61 (MQ=255)                                                                  caAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                     >  2:557123‑M1/1‑20 (MQ=255)                                                                        acTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca               <  1:445176‑M1/90‑77 (MQ=255)                                                                        acTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca               <  2:627102‑M1/90‑77 (MQ=255)                                                                         cTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                            >  2:201565‑M1/1‑13 (MQ=255)                                                                         cTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                            <  1:201565‑M1/76‑64 (MQ=255)                                                                                aCTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca                                <  1:73274‑M1/65‑60 (MQ=255)                                                                                aCTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca                                >  2:73274‑M1/1‑6 (MQ=255)                                                                                  ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc     >  1:159821‑M1/1‑4 (MQ=255)                                                                                  ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           >  2:369582‑M1/1‑4 (MQ=255)                                                                                  ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  1:369582‑M1/52‑49 (MQ=255)                                                                                   tAAggaaggtgcgaacaagtccctgatatgagatc                                                           >  2:425275‑M1/1‑3 (MQ=255)                                                                                   tAAggaaggtgcgaacaagtccctgatatgagatc                                                           <  1:425275‑M1/35‑33 (MQ=255)                                                                                    aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                    >  2:497310‑M1/1‑2 (MQ=255)                                                                                    aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                    <  1:497310‑M1/73‑72 (MQ=255)                                                                                     aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  <  1:621795‑M1/90‑90 (MQ=255)                                                                                     |                                                                                          CGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972667‑1972840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑