| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,851,887 | G→A | R479H (CGT→CAT) | mutS → | DNA mismatch repair protein MutS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,851,887 | 0 | G | A | 100.0% | 66.2 / NA | 19 | R479H (CGT→CAT) | mutS | DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (13/6); total (13/6) | |||||||||||
CCGCGAGCGTGAACGTACCGGCCTGGACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCGTGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTACATCATTCCAGAGCT > NZ_CP009273/2851807‑2851968 | ccGCGAGCGTGAACGTACCGGCCTGGACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAg > 1:353060/1‑90 (MQ=255)ccGCGAGCGTGAACGTACCGGCCTGGACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAg > 1:114827/1‑90 (MQ=255) aaCGTACCGGCCTGGACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAGCCATCTGGCAc < 1:15118/90‑1 (MQ=255) aaCGTACCGGCCTGGACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAGCCATCTGGCAc < 1:437794/90‑1 (MQ=255) ccGGCCTGGACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAGCCATCTGGCACCCATCa > 2:138568/1‑90 (MQ=255) ccGGCCTGGACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAGCCATCTGGCACCCATCa > 2:105650/1‑90 (MQ=255) ggACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACAt > 2:500853/1‑90 (MQ=255) ggACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACAt > 2:500305/1‑90 (MQ=255) cGGTGCACGGCTACTACATTCAAATCAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCg < 1:79736/90‑1 (MQ=255) actacATTCAAATCAGCCATGGGCAAAGCCATCTGGCAccc < 1:443517/41‑1 (MQ=255) actacATTCAAATCAGCCATGGGCAAAGCCATCTGGCAccc > 2:443517/1‑41 (MQ=255) actacATTCAAATCAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTAcatca > 2:17095/1‑90 (MQ=255) actacATTCAAATCAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTAcatca > 2:463459/1‑90 (MQ=255) actacATTCAAATCAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTAcatca > 2:617100/1‑90 (MQ=255) aTTCAAATCAGCCATGGGCAAAGCCATCTGGCCCCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTACATCATTCCa < 1:463459/90‑1 (MQ=255) aaTCAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTACATCATTCCAGAGCt > 1:281488/1‑90 (MQ=255) aaTCAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTACATCATTCCAGAGCt > 1:274005/1‑90 (MQ=255) cAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTACATCATTCCaga < 2:230912/84‑1 (MQ=255) cAGCCATGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTACATCATTCCaga > 1:230912/1‑84 (MQ=255) | CCGCGAGCGTGAACGTACCGGCCTGGACACGCTGAAAGTTGGCTTTAATGCGGTGCACGGCTACTACATTCAAATCAGCCGTGGGCAAAGCCATCTGGCACCCATCAACTACATGCGTCGCCAGACGCTGAAAAACGCCGAGCGCTACATCATTCCAGAGCT > NZ_CP009273/2851807‑2851968 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |