Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2031205	2031248	44	2 [1]	[1] 2	hprS	two‑component system sensor histidine kinase HprS

TGAGCAAAGTACAATGGCGACAATGCAAATTATAATGCTATTAATTTTATACTGTTCAAGCATGTTATGTCTGGCTGAAGCCAATTTAGCC  >  NZ_CP009273/2031115‑2031205                                                                                          |  tGAGCAAAGTACAATGGCGACAATGCAAATTATAATGCTATTAATTTTATACTGTTCAAGCATGTTATGTCTGGCTGAAGCCAATTTAGc   >  1:208820/1‑90 (MQ=255)  gAGCAAAGTACAATGGCGACAATGCAAATTATAATGCTATTAATTTTATACTGTTCAAGCATGTTATGTCTGGCTGAAGCCAATTTAGcc  >  1:276985/1‑90 (MQ=255)                                                                                          |  TGAGCAAAGTACAATGGCGACAATGCAAATTATAATGCTATTAATTTTATACTGTTCAAGCATGTTATGTCTGGCTGAAGCCAATTTAGCC  >  NZ_CP009273/2031115‑2031205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑