Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2439785	2439815	31	2 [1]	[1] 3	mepA	penicillin‑insensitive murein endopeptidase

CCACGGCGTCGCTGCCAGGCTGGCGCTACTGGCAAGCAGAGCCAGCAGCGCAATCGCGGTTTTATTCATTTTTTACCAGCGTGGAATATCAGTCTTCACATCGGCATTTTG  >  NZ_CP009273/2439795‑2439905                      |                                                                                          ccACGGCGTCGCTGCCAGGCTGGCGCTACTGGCAAGCAGAGCCAGCAGCGCAATCGCGGTTTTATTCATTTTTTACCAGCGTGGAATATc                       <  1:311213/90‑1 (MQ=255)                      ggCGCTACTGGCAAGCAGAGCCAGCAGCGCAATCGCGGTTTTATTCATTTTTTACCAGCGTGGAATATCAGTCTTCACATCGGCATTTTg  >  1:390310/1‑90 (MQ=255)                      ggCGCTACTGGCAAGCAGAGCCAGCAGCGCAATCGCGGTTTTATTCATTTTTTACCAGCGTGGAATATCAGTCTTCACATCGGCATTTTg  >  2:299985/1‑90 (MQ=255)                      |                                                                                          CCACGGCGTCGCTGCCAGGCTGGCGCTACTGGCAAGCAGAGCCAGCAGCGCAATCGCGGTTTTATTCATTTTTTACCAGCGTGGAATATCAGTCTTCACATCGGCATTTTG  >  NZ_CP009273/2439795‑2439905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑