| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1046001 | NA (NA) | 27 (0.850) | 21/166 | 0.3 | 93.1% | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
| ? | NZ_CP009273 | = 1903046 | 2 (0.060) | intergenic (‑23/‑136) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
CCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGC > NZ_CP009273/1902957‑1903135 | ccTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacctacct > 1:836427/1‑90 (MQ=255) cTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTg > 1:487248‑M2/1‑89 (MQ=255) tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTgg < 2:480752‑M2/90‑3 (MQ=255) tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTgg < 2:524004‑M2/90‑3 (MQ=255) tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTgg < 2:79133‑M2/90‑3 (MQ=255) tGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTgg < 1:98818‑M2/90‑3 (MQ=255) cgcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggta < 2:293581‑M2/90‑5 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATg > 2:432365‑M2/78‑90 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATg < 1:472627‑M2/13‑1 (MQ=255) gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaa < 2:266982‑M2/90‑6 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTc > 2:633072‑M2/76‑90 (MQ=255) ccAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatg > 2:697894‑M2/1‑83 (MQ=255) agcagcAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactc > 2:884896‑M2/1‑79 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTaaa < 2:404891‑M2/21‑1 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAAc < 1:240294‑M2/22‑1 (MQ=255) agcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattga < 2:501180‑M2/90‑23 (MQ=255) gcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgat > 1:616370‑M2/1‑67 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCgtt < 1:683366‑M2/33‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCgtt < 2:167634‑M2/33‑1 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCgtta > 2:461654‑M2/57‑90 (MQ=255) ccacGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttt > 2:15340‑M2/1‑60 (MQ=255) acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgtttta > 1:480752‑M2/1‑58 (MQ=255) aaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAgcgc < 1:633072‑M2/46‑1 (MQ=255) aaCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttc > 2:367745‑M2/1‑53 (MQ=255) aCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttca < 2:461336‑M2/90‑39 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCt < 1:673524‑M2/48‑1 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACt > 1:194405‑M2/39‑90 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACt > 2:790910‑M2/39‑90 (MQ=255) aCCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 2:821073‑M2/90‑48 (MQ=255) aCCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 1:652644‑M2/90‑48 (MQ=255) aTCGAAACTTTTTCACTCCAAACTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 2:704400‑M2/1‑39 (MQ=255) gAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac > 2:930513‑M2/1‑36 (MQ=255) ctaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATAtt > 1:35862‑M2/28‑90 (MQ=255) aaCTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt > 1:671724‑M2/1‑34 (MQ=255) cACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 2:558620‑M2/1‑26 (MQ=255) cACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 2:836427‑M2/1‑26 (MQ=255) tCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc > 1:524004‑M2/1‑23 (MQ=255) tggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGa > 1:419941‑M2/14‑90 (MQ=255) agcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGa > 1:76550‑M2/10‑90 (MQ=255) ccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCtt < 2:419941‑M2/88‑1 (MQ=255) tCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 1:293581‑M2/1‑10 (MQ=255) cACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga < 2:892083‑M2/90‑82 (MQ=255) ctacctggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaa > 2:861352‑M2/1‑6 (MQ=255) ctggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac < 2:272801‑M2/90‑89 (MQ=255) ctTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAgcg < 1:867870/90‑1 (MQ=255) ttATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAgcgc > 1:10696/1‑90 (MQ=255) | CCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGC > NZ_CP009273/1902957‑1903135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |