| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,819,318 | 0 | G | A | 52.4% | 7.0 / 25.7 | 21 | intergenic (‑124/+79) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| Reads supporting (aligned to +/- strand): ref base G (10/0); new base A (0/11); total (10/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.84e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.82e-05 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTT > NZ_CP009273/1819230‑1819385 | tCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTGAGAAGagaaaaga > 2:105367/1‑90 (MQ=255) ccGTGGATGTTTATCGGCAACTGGGGTGTTTTACGTTAGTGGTGATCAGGTTTTTTTTACAACTTTTTGAAAAGAAAAAAAAAAA‑ccgcc < 1:212782/90‑1 (MQ=255) ggATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATc > 2:811051/1‑90 (MQ=255) gATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATcc > 2:894676/1‑90 (MQ=255) gATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATcc > 2:212782/1‑90 (MQ=255) aTCGGCACCTGGGGTAATTTCCGTTAGTGGGAATCAGGTTTTTTTTACAACTTTTTGAAAAGAAAAAAAAAAA‑CCGCCGATCCTGTCCAc < 2:728643/90‑1 (MQ=255) aaCTGGGGTGATTTACGTTAGTGGTGATCAGGTTTTTTTTACACCTGTTTGAGAAGAAAAAAAAAAA‑CCGCCGATCCTGTCCACCGCAtt < 2:115133/90‑1 (MQ=255) aCTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTa > 2:723604/1‑90 (MQ=255) aCTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTa > 2:502112/1‑90 (MQ=255) ctggggTGATTTACGTTAGTGGTGATCAGTTTTTTTTTACAACTGTTTGAAAAAAAAAAAAAAAA‑CCGCCGATCCTGTCCACCGCATTAc < 1:324923/87‑1 (MQ=255) gtgtTTTGCGTTGGTGGTGA‑CCGGCTTTTTTTCACACTTTTTGAAAAAAAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCaa < 1:502112/90‑1 (MQ=255) gtattttAGGTTAGGGGTGACCGGGTTTTTTTAACAACTGTTTGAAAAGAAAAAAAAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCaa < 2:644025/86‑1 (MQ=255) gTGATTTGTTTTAGTGGTGTTTGGTTTTTTTTCACATCTGTTGGAGAAGAAAAAAAAACC‑CCGCCGATCCTGTCCACCGCATTACTGCaa < 1:582466/90‑1 (MQ=255) gTGATTTACGTTAGTGGTGATCAGGTTTTTTTTACAACTTTTTGAGAAGAAAAAAAAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCaa < 2:85922/90‑1 (MQ=255) ttACGTTAGTGGTGATCAGGTTTTTTTTACAACTGTTTGAAAAGAAAAAAAAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAg < 2:113817/90‑1 (MQ=255) gtggtgATCAGGCTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAg > 2:774737/1‑90 (MQ=255) cTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCtt > 2:475261/1‑90 (MQ=255) cTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCtt > 2:893673/1‑90 (MQ=255) tttttaACATTTCTTTGAGAAGAAAAAAAAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTaa < 1:603803/90‑1 (MQ=255) aCAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGgtttt > 1:75202/1‑90 (MQ=255) gTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCaa > 1:823888/1‑51 (MQ=255) gTTTGAGAAGAAAAAAAAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCaa < 2:823888/51‑1 (MQ=255) | TCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTGAGAAGAGAAAAGAAAA‑CCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTT > NZ_CP009273/1819230‑1819385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |