| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,360,813 | 0 | C | T | 53.8% | 3.8 / 11.3 | 14 | F88F (TTC→TTT) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| Reads supporting (aligned to +/- strand): ref base C (0/6); new base T (7/0); total (8/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.83e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGATTCAGTCACGTTACTGGCGACTTAA‑TTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGC > NZ_CP009273/2360745‑2360899 | aaCAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGATTCAGTCACGTTACTGGCGACTTa < 1:214367/90‑1 (MQ=255) aCAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGATTCAGTCACGTTACTGGCGACTTaa < 1:813125/90‑1 (MQ=255) gCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGATTTAGTCACGGTTCTGGGGACCTAa‑ttt > 2:153389/1‑89 (MQ=255) cATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGATTCAGTCACGTTACTGGCGACTTAa‑ttatt < 2:575305/90‑1 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGGTTAGGTACCGTTTTTGGGGCCTTAA‑TTTTTACCCttt > 1:789833/1‑89 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGGTTTTGTCACGTTTCTGGCGGCCTAA‑TTTTTTTCCtttt > 1:9782/1‑88 (MQ=255) gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGGGTTAGTCACCTTTATGGCGGCGTAA‑ATATTATCCtttt > 1:839758/1‑88 (MQ=255) tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGATTCAGTCACGTTACTGGCGACTTAA‑TTATTACCCTTGAt < 1:852280/90‑1 (MQ=255) aCCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGGGTTAGTCACCTTACTGGCGGCTTTA‑TTATTTCCCCTTATGCCGATCTCCCGa > 2:589427/1‑90 (MQ=255) gggCAACATTCAGCGATTATGGC‑GGGGTTTAGTCACGTTACTGGCGACTTAA‑TTATTACCCCTTTTGCCGATCTCCCGAAACCCCCcgaa > 2:811945/1‑90 (MQ=255) cAACATTCAGCGATTATGGC‑GGGGGTTAGTCACCTTACTGGCGGCTTAA‑TTTTTTTCCTTTTTTCCGGGCTCCACAAACCCCCCgaagaa > 1:412266/1‑90 (MQ=255) aaCATTCAGCGATTATGGG‑GGGTTTCAGCCCCGTTACGGGCGACTTAA‑TTATTCCCCTTGATGCCGATCTCCAAAACCCGCCAGAAGaaa < 1:589427/90‑1 (MQ=255) aGCGATTATGGC‑GGGGTTTAGTTACCTTTCTGGGGGCTTAATTTTTTACCCTT‑TTTCCGATCTCCCAAAACCCCCCGAAAAAAAaccccc > 2:504610/1‑89 (MQ=255) aTTCAGTCACGTTACTGGCGACTTAA‑TTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGc < 2:789833/90‑1 (MQ=255) | AACAGCCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGC‑GGGATTCAGTCACGTTACTGGCGACTTAA‑TTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGC > NZ_CP009273/2360745‑2360899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |