| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 282361 | 69 (1.240) | 4 (0.080) | 4/144 | 3.4 | 6.1% | coding (1256/1383 nt) | yagG | MFS transporter |
| ? | NZ_CP009273 | = 282393 | 62 (1.270) | coding (1288/1383 nt) | yagG | MFS transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAACTATTCCGCCAGCAGCAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/282266‑282361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcgggcatCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGATGGTGGTGAG < NZ_CP009273/282393‑282306 CAACTATTCCGCCAGCAGCAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGC < 2:1399017/90‑1CAACTATTCCGCCAGCAGCAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGC < 1:1279485/90‑1 ACTATTCCGCCAGCAGCAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGG < 1:327913/90‑1 TATTCCGCCAGCAGCAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGC < 1:1332406/90‑1 TTCCGCCAGCAGCAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCAT > 2:461139/1‑90 GCAGCAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGC < 2:643870/90‑1 CAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGG > 2:826109/1‑74 CAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGG < 1:826109/74‑1 GTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAG > 1:862276/1‑50 GTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAG < 2:862276/50‑1 TGCTCTACGCGGGCATCGGTGAGGTTGGAGAGCGACAGCATGATGAAAATGCCCGCGTAGAGCCCCACCGGCACCACGCAGAACAGAATT > 1:658143/1‑90 ACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGATG > 1:1454589/1‑90 ACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCAC > 1:299856/1‑59 ACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCAC < 2:299856/59‑1 CGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGATGGTG > 2:801797/1‑90 GGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGATGGTGG < 1:1353923/90‑1 CATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCCCCACCGGCACCACGCAGAACAGAATTTTGATGGTGGTGA < 2:844245/90‑1 CATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGATGGTGGTGA < 1:219868/90‑1 ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGATGGTGGTGAG > 2:1143562/1‑90 ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGATGGTGGTGAG > 1:1291767/1‑90 ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC > 1:643568/1‑65 ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC < 2:643568/65‑1 CAACTATTCCGCCAGCAGCAGCGTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/282266‑282361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcgggcatCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGATGGTGGTGAG < NZ_CP009273/282393‑282306 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |