| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 77 (1.390) | 38/164 | 0.2 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
ACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360016‑360193 | aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCaa > 1:1206034/1‑90 (MQ=255)aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCaa < 1:1398993/90‑1 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:1607158/1‑90 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 1:33819/90‑1 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 1:960643/90‑1 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 1:140154/90‑1 (MQ=255) cATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgg < 1:1291605/90‑1 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt < 2:1341545/90‑1 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGACAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt < 2:1362399/90‑1 (MQ=255) cgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCt < 1:811440/90‑1 (MQ=255) gcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTg < 2:519194/90‑1 (MQ=255) ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGG‑ccccc > 2:1091052/1‑87 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATTGCGGGGGT‑CCCGccccc > 1:522229/1‑88 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCa < 1:1607158/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCa < 2:679990/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTACTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCa < 1:724986/90‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCAc < 1:1013272/90‑1 (MQ=255) cAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCAcc < 1:274300/90‑1 (MQ=255) aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:856852/59‑1 (MQ=255) aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg > 1:856852/1‑59 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGTGCCTCcccccccccc > 2:1217153/1‑90 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTACTGGCAGTTTATGGCGGGGGG‑CCTCccccccccccc > 1:1427423/1‑89 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGTCCGCCACCCTcc < 1:1206114/90‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTGCTGGCAGTTTATGGCGGGCGG‑CCTGCCCCCCCCCCCCCcgg > 2:941813/1‑90 (MQ=37) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt < 1:83859/68‑1 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 2:83859/1‑68 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGcc < 1:230116/90‑1 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGt < 2:1505682/90‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGC‑CCTTGCCCCCCCCCCCCCGGCCGtt > 2:1206114/1‑90 (MQ=37) atgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCtt < 2:215375/90‑1 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGG‑CCTGCCCCCCCCCCCCCCGGCCGCTGGttt > 2:1000399/1‑89 (MQ=25) atAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGTCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc < 2:465400/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTTCCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 2:1576203/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 2:1127463/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 2:1414527/90‑1 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGG‑CCCGCCCCCCCCCCCCCCGGCCGCTGCTTTTCAAAGTTc > 2:905092/1‑90 (MQ=21) cAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGG‑CCCGCCCCCCCCCCCCCCCGCCCCGGCTTTGCAACATTCaa > 1:1512364/1‑90 (MQ=19) ttCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcgg < 1:905092/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 1:276944/90‑1 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGGGG‑CCTCCCCCCCCCCCCCCCGGCCGGTGCTTCGCAACGTTCAAAACCCCCCCccgccgg > 2:1219557/1‑87 (MQ=9) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑cc > 2:546279/1‑35 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑cc < 1:546279/35‑1 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCa > 2:233736/1‑44 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCa < 1:233736/44‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:1000399/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGACACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:1348679/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGC‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:1559705/90‑1 (MQ=255) attaaTTCCTGGCAGTTTATGGCGGGGGT‑CCCGCCCCCCCCCCCCCCGGCCGTTGCTTCGCAACATTTAAAACCGCCCCCCCCGGGtttt > 2:612562/4‑89 (MQ=2) attaaTTCCTGGCAGTTTATGGCGGGCGG‑CCCGCCCCCCCCCCCCCCGGCCGCTGCTTCGCCACGTTCAAAACCCCTCCCCGCGGGtttt > 2:1594873/4‑89 (MQ=2) ccAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 2:1325735/90‑1 (MQ=38) ccAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 2:1206034/90‑1 (MQ=38) taaTTCCTGGCAGTTTATGGCGGGCGG‑CCCCCCCCCCCCCCCCCCGGCCCGTGCTTCGCAACGTTCAAAACCCCTCCCCGCGGGtttttt > 2:186278/2‑87 (MQ=2) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCTGCTCCCGGCGGATTTGTcc < 1:842874/90‑1 (MQ=255) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:387013/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:1223929/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:590638/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:491749/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:1094815/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:36647/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:1497358/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:680039/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:780737/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:1021230/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:21472/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGAAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:503433/90‑1 (MQ=25) | ACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGT‑CCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360016‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |