| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 287112 | NA (NA) | 62 (1.120) | 35/164 | 0.3 | 77.5% | intergenic (‑55/‑99) | BW25113_RS01405/BW25113_RS01410 | IS1‑like element IS1B family transposase/hypothetical protein |
| ? | NZ_CP009273 | 1903038 = | 18 (0.320) | intergenic (‑15/‑144) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
Only 100 of 105 total aligned reads displayed.
GTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTG > NZ_CP009273/1902949‑1903126 | aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccc < 2:742269‑M2/1‑1 (MQ=255) gAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc < 2:137580/90‑1 (MQ=255) gAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc < 2:1631405/90‑1 (MQ=255) gAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc < 1:621324/90‑1 (MQ=255) gAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc < 2:1318630/90‑1 (MQ=255) gAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc < 2:1013858/90‑1 (MQ=255) gAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc < 1:1303578/90‑1 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacccacc < 2:55973‑M2/4‑1 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacccacc > 1:882870‑M2/87‑90 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacccacc < 2:882870‑M2/4‑1 (MQ=255) aaTACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacct > 1:190783/1‑90 (MQ=255) aTACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCaccta < 2:1590329/90‑1 (MQ=255) agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCacctac > 2:1235768‑M2/84‑90 (MQ=255) aCCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacctacc < 2:71274/90‑1 (MQ=255) aCCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacctacc < 2:820677/90‑1 (MQ=255) ccTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacctacct > 1:362060/1‑90 (MQ=255) ccTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacctacct > 2:1467344/1‑90 (MQ=255) ccTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacctacct > 1:494881/1‑90 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCtt > 2:1443479‑M2/81‑90 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATg < 1:533883‑M2/13‑1 (MQ=255) gcCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaa > 2:362060‑M2/1‑85 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTc > 1:1004348‑M2/76‑90 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTc > 1:1344251‑M2/76‑90 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTc > 1:1580791‑M2/76‑90 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTc > 2:867774‑M2/76‑90 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCa > 1:880099‑M2/75‑90 (MQ=255) ccAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatg > 2:284949‑M2/1‑83 (MQ=255) gatagaaacagaatccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCAt < 1:826144‑M2/17‑1 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCAt < 2:1672864‑M2/17‑1 (MQ=255) gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCAt < 1:867774‑M2/17‑1 (MQ=255) gatagaaacagaagccactggagcacctcaaaaaaaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCAt < 1:890167‑M2/17‑1 (MQ=255) aaGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc < 2:564638/75‑1 (MQ=255) aaGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacc > 1:564638/1‑75 (MQ=255) agcagcAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactc > 1:448753‑M2/1‑79 (MQ=255) cagcaAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactcca > 2:1225589‑M2/1‑77 (MQ=255) cagcaAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactcca > 1:1412625‑M2/1‑77 (MQ=255) cagcaAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACATACCTggtaatgactcca > 2:78284‑M2/1‑77 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAAc > 2:951819‑M2/69‑90 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCa > 1:23453‑M2/64‑90 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCg < 1:1235768‑M2/31‑1 (MQ=255) ccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCg < 2:396714‑M2/31‑1 (MQ=255) agcCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattga > 1:1414300‑M2/1‑68 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCgtt < 1:1215441‑M2/33‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCgtt < 2:183459‑M2/33‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCgtt < 1:286477‑M2/33‑1 (MQ=255) cAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatag > 1:1467344‑M2/1‑65 (MQ=255) cacGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgtttt < 2:1430351‑M2/90‑32 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAAc < 2:1517494‑M2/41‑1 (MQ=255) acctaaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAAc > 1:140744‑M2/50‑90 (MQ=255) cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacctacc > 1:751732/1‑56 (MQ=255) cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCacctacc < 2:751732/56‑1 (MQ=255) cGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttat < 1:1430978‑M2/90‑34 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAgc > 1:1580372‑M2/47‑90 (MQ=255) aCCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtagtgactccaacttattgatagtgttttatgttca < 1:89644‑M2/90‑39 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAAc < 2:1145892‑M2/51‑1 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACt > 1:38879‑M2/39‑90 (MQ=255) ccatcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTa < 2:825133‑M2/53‑1 (MQ=255) atcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATg > 1:1476971‑M2/36‑90 (MQ=255) atcatacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATg > 2:486012‑M2/36‑90 (MQ=255) aCCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 1:1648083‑M2/90‑48 (MQ=255) aCCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 1:1299730‑M2/90‑48 (MQ=255) catacactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTc < 1:1374760‑M2/57‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTaa > 2:603949‑M2/30‑79 (MQ=255) cactaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGata < 2:1344251‑M2/61‑1 (MQ=255) gAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac > 1:1322696‑M2/1‑36 (MQ=255) ctaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAAc > 1:422284‑M2/28‑78 (MQ=255) ctaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAAc < 2:422284‑M2/51‑1 (MQ=255) ctaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATAtt > 2:1520002‑M2/28‑90 (MQ=255) ctaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATAtt > 1:1212608‑M2/28‑90 (MQ=255) ctaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATAtt > 1:1131239‑M2/28‑90 (MQ=255) ctaaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATAtt > 2:710029‑M2/28‑90 (MQ=255) taaatcagtaagttggcagcatcaccCACCCACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAg < 2:101530‑M2/43‑1 (MQ=255) taaatcagtaagttggcagcatcaccCACCCACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAg > 1:101530‑M2/27‑69 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAgcgc < 1:48033‑M2/46‑1 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAgcgc > 2:48033‑M2/26‑71 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 1:968846‑M2/26‑90 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 1:1046144‑M2/26‑90 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 1:931667‑M2/26‑90 (MQ=255) aaatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCg > 1:1321006‑M2/26‑90 (MQ=255) aatcagtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGt > 1:242808‑M2/25‑90 (MQ=255) ttttCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc < 2:700510‑M2/90‑61 (MQ=255) tttCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtg > 2:375646‑M2/1‑29 (MQ=255) tttCACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtg < 1:375646‑M2/56‑28 (MQ=255) gtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCatgag > 2:870985‑M2/20‑48 (MQ=255) gtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCatgag < 1:870985‑M2/31‑3 (MQ=255) gtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAAc > 1:1403390‑M2/20‑60 (MQ=255) gtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAAc < 2:1403390‑M2/41‑1 (MQ=255) gtaagttggcagcatcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCttt > 2:278538‑M2/20‑90 (MQ=255) cACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 2:548668‑M2/1‑26 (MQ=255) cACTCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:1002126‑M2/1‑26 (MQ=255) tCCAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc > 1:1041113‑M2/1‑23 (MQ=255) ccAATCTCCGTTTCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct < 1:116973‑M2/90‑69 (MQ=255) catcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGt > 2:1608669‑M2/8‑90 (MQ=255) tcaccCACCTACCTTATGTCATTAAACTAGCATTCGTTAGTTAAACAGCTCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCg > 2:1253862‑M2/6‑90 (MQ=255) tcaccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCg > 1:781683‑M2/6‑90 (MQ=255) accCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCt > 2:623727‑M2/4‑90 (MQ=255) accCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCt > 1:274891‑M2/4‑90 (MQ=255) ccCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCtt < 1:638124‑M2/88‑1 (MQ=255) tCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg < 2:102001‑M2/90‑81 (MQ=255) tCACCTACCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatacagctccaccgattttg < 2:556852‑M2/90‑81 (MQ=255) | GTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTG > NZ_CP009273/1902949‑1903126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |