New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 470194 =40 (0.720)3 (0.060) 3/146 3.8 6.8% coding (424/861 nt) tesB acyl‑CoA thioesterase II
?NZ_CP009273 470249 = 47 (0.950)coding (369/861 nt) tesB acyl‑CoA thioesterase II
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGAATTTATCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCGGTTTGCCGTTTTGAATA  >  NZ_CP009273/470160‑470336
                                                                                         |                                                                                       
aTGAATTTATCTTTCATCACTGTCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGcgcg                                                                                         <  1:892116/90‑1 (MQ=255)
aTGAATTTATCTTTCAGCACTGTCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGcgcg                                                                                         <  1:411503/90‑1 (MQ=255)
 tGAATTTATCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCgg                                                                                        >  2:537048/1‑90 (MQ=255)
   aaTTTATCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGAc                                                                                      <  2:1643656/90‑1 (MQ=255)
   aaTTTATCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGAc                                                                                      >  1:39768/1‑90 (MQ=255)
   aaTTTATCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGAc                                                                                      >  2:670167/1‑90 (MQ=255)
   aaTTTATCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGAGCTGGCGCGGAc                                                                                      <  1:1071948/90‑1 (MQ=255)
       tATCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCa                                                                                  >  1:1443175/1‑90 (MQ=255)
        aTCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCAt                                                                                 <  2:241200/90‑1 (MQ=255)
        aTCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCAt                                                                                 <  2:901481/90‑1 (MQ=255)
            ttCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGtt                                                                             >  2:375958/1‑90 (MQ=255)
                  aCTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGa                                                                       <  1:45701/90‑1 (MQ=255)
                     ggcggcAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATg                                                                     <  1:1238564/89‑1 (MQ=255)
                     ggcggcAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATg                                                                     >  2:1238564/1‑89 (MQ=255)
                     ggcggcAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGt                                                                    >  2:1323257/1‑90 (MQ=255)
                            gcagGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAAc                                                             <  1:398325/90‑1 (MQ=255)
                              gtccgcgcCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAAccc                                                           >  2:1186989/5‑90 (MQ=255)
                              agGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAAccc                                                           <  2:936686/90‑1 (MQ=255)
                               ggTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCg                                                          >  2:209090/1‑90 (MQ=255)
                                gTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGc                                                         <  1:1471460/90‑1 (MQ=255)
                                 tGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCt                                                        >  1:346491/1‑90 (MQ=255)
                                  gcgcCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCtt                                                       >  1:249710/1‑90 (MQ=255)
                                       aGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGt                                                  <  2:1120707/90‑1 (MQ=255)
                                       aGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGt                                                  >  2:125018/1‑90 (MQ=255)
                                          gATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGcc                                               >  2:1142450/1‑90 (MQ=255)
                                           aTTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCt                                              <  2:365219/90‑1 (MQ=255)
                                             tGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTgg                                            >  1:793906/1‑90 (MQ=255)
                                                  gATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAaga                                       <  1:334437/90‑1 (MQ=255)
                                                     ttGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGc                                    <  1:1157109/90‑1 (MQ=255)
                                                     ttGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGc                                    <  2:70234/90‑1 (MQ=255)
                                                      tGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCTCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCa                                   <  1:1590214/90‑1 (MQ=255)
                                                       gCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGa                                                                       <  1:556727/53‑1 (MQ=255)
                                                       gCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGa                                                                       >  2:556727/1‑53 (MQ=255)
                                                        cGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGcc                                               >  1:1051121/1‑76 (MQ=255)
                                                        cGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGcc                                               <  2:1051121/76‑1 (MQ=255)
                                                          tttCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCa                               <  1:537048/90‑1 (MQ=255)
                                                             ccGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCAt                                                                                 >  2:674064/1‑37 (MQ=255)
                                                             ccGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCAt                                                                                 >  2:648535/1‑37 (MQ=255)
                                                             ccGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCAt                                                                                 <  1:674064/37‑1 (MQ=255)
                                                             ccGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCAt                                                                                 <  1:648535/37‑1 (MQ=255)
                                                                   ggAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATaaaaaa                      <  2:482136/90‑1 (MQ=255)
                                                                    gAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAAt                     >  1:307730/1‑90 (MQ=255)
                                                                      ggCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCg                   >  1:560408/1‑90 (MQ=255)
                                                                      ggCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCg                   >  2:1471870/1‑90 (MQ=255)
                                                                      ggCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCg                   >  2:1509648/1‑90 (MQ=255)
                                                                      ggCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCg                   >  1:708910/1‑90 (MQ=255)
                                                                      ggCCATCAGGCGCTGGCGCGGACGGAATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCg                   >  1:641058/1‑90 (MQ=255)
                                                                            cAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCGGTTTGc             <  2:249710/90‑1 (MQ=255)
                                                                                cgcTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGAAGTCATATAAAAAATCGGTTTGCCGtt         >  2:60100/1‑90 (MQ=255)
                                                                                  cTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAAc                                                             >  1:1245700/1‑36 (MQ=255)
                                                                                  cTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAAc                                                             <  2:1245700/36‑1 (MQ=255)
                                                                                  cTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTg                                                    >  2:1158690/1‑45 (MQ=255)
                                                                                  cTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTg                                                    <  1:1158690/45‑1 (MQ=255)
                                                                                   tGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGaa                                          <  1:747548/54‑1 (MQ=255)
                                                                                   tGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGaa                                          >  2:747548/1‑54 (MQ=255)
                                                                                      cgcgGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCGGTTTGCCGTTTTGAAt   <  1:542012/90‑1 (MQ=255)
                                                                                       gcgGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCGGTTTGCCGTTTTGAATa  <  2:1458045/90‑1 (MQ=255)
                                                                                         |                                                                                       
ATGAATTTATCTTTCAGCACTGGCGGCAGCAGGTGCGCCAGCGATTGGGCGATTTGCGTTTCCGAAGGGAGGCCATCAGGCGCTGGCGCGGACGGCATTGTTTTTTGATGTTCGAAACCCGCTTCTGGTGCCTGGAAAGAGGCAGTCATATAAAAAATCGGTTTGCCGTTTTGAATA  >  NZ_CP009273/470160‑470336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.