| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 353,601 | 0 | C | A | 54.8% | 9.7 / 37.9 | 31 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| Reads supporting (aligned to +/- strand): ref base C (13/1); new base A (1/16); total (14/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.01e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.31e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATG > NZ_CP009273/353519‑353689 | cGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AAAAAAA‑ccg > 1:947024/1‑90 (MQ=255) gCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑ccgc > 2:766784/1‑90 (MQ=255) gCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑ccgc > 1:922602/1‑90 (MQ=255) aacaccCGCGCTTTTACCCACCGCCATGTGAAAAAATGCCCTCGGGGCGGCTGTCTGCCAGCTTTTTTCCCGCCAA‑AAAAAAA‑CCGCCGt < 2:1361974/90‑1 (MQ=16) cacccGCGCTTTTACCCACCCCCTTGTAAAAAAATCCCTCCGGGGGGGCTTTCTCCCAGTTTTTTTCCCGCCGC‑AAAAAAA‑CCGCCGTtc < 1:877826/87‑1 (MQ=255) cacccGCGCTTTTACCCACCCCCATGTGAAAAAATCCCTTCGGGGCGGCTGTCTGCCAGCTTTTTTCCCGCCGC‑AAAAAAA‑CCGCCGTtc < 2:853894/87‑1 (MQ=21) cacccGCGATTTTATCAAACGCCTTGGAAAAAAATTCCTCCGCGGCGGCTTTCTCCCATTTTTTTTCCCGCCGC‑AACAAAA‑CCGCCGTtc < 2:1288114/87‑1 (MQ=255) cgcgCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTtctctc > 2:857732/1‑90 (MQ=255) gcgcATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTcc > 1:347150/1‑90 (MQ=255) gcgcATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTcc > 2:767075/1‑90 (MQ=255) cccACCGCCTTGTAAAAAATTCCCTCCGGGGGGGCTGTCTGCC‑GTTTTTTTTCCCCCCA‑AAAAAAACCCGCCGTTCTCTCCAGTAGTGGc < 1:1131324/89‑1 (MQ=255) ccAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCg > 1:499486/1‑90 (MQ=255) cAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCgg > 1:901991/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTTGGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCGCTCCAGTAGCGGCgggg > 1:629087/1‑90 (MQ=37) aCGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 1:931774/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 1:700300/1‑90 (MQ=255) aCGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCgggg > 2:206198/1‑90 (MQ=255) aaaatTCCCTCCGGGGGGGTTTTCGGCCAGTTTTTTTCCCCCCGA‑AAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATa < 2:1425057/90‑1 (MQ=255) aaaatTCCCTCCGCGGCGGCTGTCCGCC‑GTTTTTTTCCCCCCCCAAAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATa < 1:599841/90‑1 (MQ=255) aaaagTGCCTCGGGGGGGGTTTTCTCCCAGTTTTTTTCCCGCCGC‑AAAAAAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATa < 2:1140729/90‑1 (MQ=255) gcggggcggcTCTCCCCCAGTTTTTTTCCCGCCAA‑AAAAAAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGcc < 1:280225/86‑1 (MQ=255) aGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGAGGAAAAAAGTTTTAACCCGTC‑TGTTTTGTgggga > 2:373352/1‑87 (MQ=255) tttttcCCGCCGC‑AAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 2:754651/89‑1 (MQ=255) tttttcCCCCCGA‑AAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 2:526737/89‑1 (MQ=255) tttttcCCCCCCC‑AAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 2:869328/89‑1 (MQ=255) tttttCCCCCCCAAAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgc < 2:989649/90‑1 (MQ=255) tttcCCGCCGA‑AAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctg < 2:1292106/90‑1 (MQ=255) tttcCCCCCGA‑AAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctg < 2:1166140/90‑1 (MQ=255) accgcccA‑AAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGctgctg < 1:49415/89‑1 (MQ=255) cgccgc‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCg > 1:837078/1‑37 (MQ=255) cgccgc‑AAAAAAA‑CCGCCGTTCTCTCCAGTAGTGGCg < 2:837078/37‑1 (MQ=255) acaaAC‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtg < 2:953227/90‑1 (MQ=255) | CGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATGCCTTCGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGC‑AACAAAA‑CCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGA‑GAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATG > NZ_CP009273/353519‑353689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |