| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 52.5% | 12.8 / 54.1 | 40 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| Reads supporting (aligned to +/- strand): ref base G (2/17); new base A (21/0); total (23/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.93e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.16e-07 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTA > NZ_CP009273/2380254‑2380429 | cAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCg < 1:393433/90‑1 (MQ=255) tGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTc < 1:40144/90‑1 (MQ=255) gATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTccc < 2:302487/90‑1 (MQ=255) aTGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGGCACAAAAAACGGCAAGCACC‑ATTTTTTTTTcct > 2:1258824/1‑89 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGGGACCGGAAAAAG‑GACATGGG‑C‑AATTTTTTTTTCCTct > 2:1067721/1‑89 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAAAAAAAACGACAAGCA‑CAATTTTTTTTTccccc > 2:1439630/1‑88 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGCCAAAAAAAAAGAAAAGCA‑C‑ATTTTTTTTTTCCTct > 2:1351414/1‑89 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATc < 1:302493/90‑1 (MQ=255) tgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATc < 1:714435/90‑1 (MQ=255) ataACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGGCCGAAAAAAAGAAAAGCA‑C‑AATTTTTTTTTTCTCCTTTGtt > 1:999890/1‑90 (MQ=255) ataACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGCCAGAAAAAAAGAAAAGGA‑C‑ATTTTTTTTTTCCTCTTCtttt > 2:79543/1‑90 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTTCAAAAAAAAAAAAAAGGA‑C‑AATTTATTTTTTCTCTTCtttttttaa > 1:1207315/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCCGAAAAAAAGACATGCA‑C‑ATTTTTTTTTTCCTCATCTGtttttaa > 2:639148/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCCGAAAAAAAGACAAGGA‑C‑ATTTTTTTTTTCCTCATCtttttttaa > 2:292079/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAACGACATGCA‑C‑ATTTTTTTTTTCCTCCTCTTTTTTTAg > 2:793245/1‑90 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAAAGACATGCA‑C‑ATTTTTTTTTTTCCCATCtttttttta > 2:917832/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGGCCGAAAAAAGGACAAGCA‑C‑AATTTTTTTTTTCCCATCTTTTTTTAg > 2:576545/1‑90 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGCCCGAAAAAACGACATGCA‑C‑AATTTATTTTTTCTCATCTGTTTTTAg > 2:525254/1‑90 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGCCCGAAAAAAAGACAAGGA‑C‑ATTTTTTTTTTCCTCCtttttttttat > 2:268197/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGCCAGAAAAAAAGAAAAGGA‑A‑ATTTTTTTTTTTCTCCTCtttttttaa > 1:498431/1‑87 (MQ=255) ttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAACGACAAGCA‑C‑AATTTTTTTTTCCTCCTCTTTTTTTAGa > 2:450818/1‑90 (MQ=255) tataCAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGGCCAGAAAAAAAGACAAGCA‑C‑ATTTTTTTTTTCCTCCTCTTTTTTTAGATGCg > 2:126103/1‑90 (MQ=255) acaGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCGGAAAAAAAGACAAGCA‑C‑ATTTTTTTTTTTCTCCTCTGTTTTTAGATTCGgaaaaa > 2:639077/1‑87 (MQ=255) acaGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACAt < 1:126103/90‑1 (MQ=255) acaGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACAt < 1:918360/90‑1 (MQ=255) gTAAATAATAAAAATTTCTCGAGGC‑GGGGCCCGAAAAAACGACAAGGA‑C‑ATTTTTTTTTTCCTCCTCTGTTTTTAGATGCGAAAAAAGaa > 2:186728/1‑90 (MQ=255) aaaTAATAAAAATTTCTCGAGGC‑GGGGCCCGAAAAAAAGACAAGAA‑C‑ATTTTTTTTTTTCTCCTCTTTTTTTAGATGCGAAAAAAGaaaa > 1:363678/1‑89 (MQ=255) ataaAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAAc < 2:919578/90‑1 (MQ=255) ataaAAATTTCTCGAGGC‑GGGGCCAGAAAAAACGACATGCA‑C‑ATTTTTTTTTTCCTCATCTTTTTTTAGATGCGAAAAAAAAAAATCaaa > 2:440046/1‑89 (MQ=255) ataaAAATTTCTCGAGGC‑GGGACCAGAAAAAAAGACAAGCA‑C‑CTTTTTTTTTTCCTCTTCTGTTTTAAGAAGAGAAAAATGAAATTCaaa > 2:668367/1‑89 (MQ=255) taaAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACg < 1:1333998/90‑1 (MQ=255) aaaaTTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACgga < 1:1183552/90‑1 (MQ=255) aaaTTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACggag < 1:1212665/90‑1 (MQ=255) aaTTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACggagg < 1:435377/90‑1 (MQ=255) ggTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGa < 1:19988/90‑1 (MQ=255) gTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGaa < 2:498431/90‑1 (MQ=255) gTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGaa < 1:79543/90‑1 (MQ=255) tCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAAt < 2:971274/90‑1 (MQ=255) aaaGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGc < 2:1391883/90‑1 (MQ=255) aGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTa > 1:1218844/1‑90 (MQ=255) | CAGAAAATGGCTCAGGTAGTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGC‑GGGTCCAGAAAAAGCGACATGCA‑C‑ATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTA > NZ_CP009273/2380254‑2380429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |